From 00d53e49f38afff79107c283c83c9a19fa78b785 Mon Sep 17 00:00:00 2001 From: mohsenht Date: Mon, 19 Oct 2026 19:18:29 -0400 Subject: [PATCH 1/2] Submitter field added to arax pathfinder calling retriever. --- workers/arax_pathfinder/requirements.txt | 2 +- workers/arax_pathfinder/worker.py | 2 ++ 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/workers/arax_pathfinder/requirements.txt b/workers/arax_pathfinder/requirements.txt index 2b04a83..72eb8e1 100644 --- a/workers/arax_pathfinder/requirements.txt +++ b/workers/arax_pathfinder/requirements.txt @@ -1,4 +1,4 @@ -catrax-pathfinder==2.5.0 +catrax-pathfinder==3.0.0 biolink-helper-pkg==1.0.1 httpx==0.28.1 # Needed for pathfinder.telemetry.child_bootstrap()'s RequestsInstrumentor; diff --git a/workers/arax_pathfinder/worker.py b/workers/arax_pathfinder/worker.py index 8354be3..26b645d 100644 --- a/workers/arax_pathfinder/worker.py +++ b/workers/arax_pathfinder/worker.py @@ -121,6 +121,7 @@ def rehydrate(kg, rehydrate_url, logger): payload = { "message": {"knowledge_graph": kg}, "parameters": {"rehydrate": True, "tier": 0}, + "submitter": f"arax-pathfinder@{settings.server_maturity}" } try: @@ -207,6 +208,7 @@ def execute_pathfinding( blocked_curies, blocked_synonyms, logger, + settings.server_maturity ) descendants = get_descendants(intermediate_categories[0]) From 9801020e8a941d0e841a80b97676688593d90b9a Mon Sep 17 00:00:00 2001 From: mohsenht Date: Tue, 20 Oct 2026 14:04:43 -0400 Subject: [PATCH 2/2] Black CI issue fixed --- workers/arax_pathfinder/worker.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/workers/arax_pathfinder/worker.py b/workers/arax_pathfinder/worker.py index 26b645d..ff16307 100644 --- a/workers/arax_pathfinder/worker.py +++ b/workers/arax_pathfinder/worker.py @@ -121,7 +121,7 @@ def rehydrate(kg, rehydrate_url, logger): payload = { "message": {"knowledge_graph": kg}, "parameters": {"rehydrate": True, "tier": 0}, - "submitter": f"arax-pathfinder@{settings.server_maturity}" + "submitter": f"arax-pathfinder@{settings.server_maturity}", } try: @@ -208,7 +208,7 @@ def execute_pathfinding( blocked_curies, blocked_synonyms, logger, - settings.server_maturity + settings.server_maturity, ) descendants = get_descendants(intermediate_categories[0])