Issues

• need to have a tip-labeling option for tree-viewer friendliness

  OpenTreeOfLife/phylesystem-api#265 · Filter by author mtholder opened on Mar 19, 2024

• some efficiency issues

  OpenTreeOfLife/phylesystem-api#256 · Filter by author mtholder opened on Jul 28, 2023

• Re-locate nudge study index

  OpenTreeOfLife/phylesystem-api#239 · Filter by author snacktavish opened on Jul 7, 2023
  4

• slow find_collections

  OpenTreeOfLife/phylesystem-api#236 · Filter by author mtholder opened on Jan 10, 2023
  2

• Add collection IDs and SHAs to /tree_of_life/about (verbose response)

  OpenTreeOfLife/phylesystem-api#228 · Filter by author jimallman opened on Dec 3, 2020
  1

  

• error on empty find_collections

  OpenTreeOfLife/phylesystem-api#226 · Filter by author mtholder opened on Apr 14, 2020

• Missing line break in Nexus file

  OpenTreeOfLife/phylesystem-api#217 · Filter by author josephwb opened on Apr 13, 2017
  1

• Unexpected values for branchLength* for trees with no branch lengths

  question
  OpenTreeOfLife/phylesystem-api#209 · Filter by author josephwb opened on Nov 2, 2016

• service to return set of trees included in the synthesis collections

  OpenTreeOfLife/phylesystem-api#207 · Filter by author kcranston opened on Oct 31, 2016
  3

• double check api behavior when getting just mapped tips

  OpenTreeOfLife/phylesystem-api#206 · Filter by author mtholder opened on Oct 24, 2016

• get ready for new otindex add / update / remove study methods

  OpenTreeOfLife/phylesystem-api#205 · Filter by author kcranston opened on Oct 17, 2016

• test_external_url.py is failing

  OpenTreeOfLife/phylesystem-api#202 · Filter by author jar398 opened on Oct 9, 2016
  1

• Preserve helpful responses in cache

  OpenTreeOfLife/phylesystem-api#200 · Filter by author jimallman opened on Oct 6, 2016

• Structured way to make 'out of band' changes to phylesystem

  OpenTreeOfLife/phylesystem-api#193 · Filter by author jar398 opened on Oct 2, 2016

• NexSON syntax for tree synthesis status

  OpenTreeOfLife/phylesystem-api#191 · Filter by author kcranston opened on Sep 26, 2016
  22

• Need a method that reserves a range of ids without writing an amendments file

  OpenTreeOfLife/phylesystem-api#190 · Filter by author jar398 opened on Sep 19, 2016

• URLs for amendment service methods

  OpenTreeOfLife/phylesystem-api#189 · Filter by author jar398 opened on Sep 8, 2016
  2

• Should get the NHX info into the nexson in some way

  OpenTreeOfLife/phylesystem-api#186 · Filter by author mtholder opened on Aug 18, 2016
  2

• Should add an "Add non-nexson tree to study" API function

  OpenTreeOfLife/phylesystem-api#185 · Filter by author mtholder opened on Aug 18, 2016

• should migrate import from non-NEXUS formats to phylesystem-api

  OpenTreeOfLife/phylesystem-api#184 · Filter by author mtholder opened on Aug 18, 2016

• Subtree method with nexson doesn't work

  OpenTreeOfLife/phylesystem-api#180 · Filter by author josephwb opened on Jun 15, 2016
  3

• Update code to support host-only API base URLs

  bug
  OpenTreeOfLife/phylesystem-api#176 · Filter by author jimallman opened on May 5, 2016
  2

  

• we need a few special case collection edit methods

  OpenTreeOfLife/phylesystem-api#175 · Filter by author mtholder opened on Apr 30, 2016
  10

• Web service to sync server's repo with github's repo

  enhancement
  OpenTreeOfLife/phylesystem-api#174 · Filter by author jar398 opened on Apr 14, 2016
  3

• Update/migrate detailed api docs

  OpenTreeOfLife/phylesystem-api#173 · Filter by author snacktavish opened on Feb 21, 2016