Issues

Model producing nan for loss, ema_loss and grad_norm after ~7000 iterations
YangLabHKUST/SpatialScope#21 · opened on Aug 25, 2025
1
csbdeep not mentioned in environment.yml
YangLabHKUST/SpatialScope#20 · opened on Jun 12, 2025
找不到--ckpt_path ./Ckpts_scRefs/VISp/model_5000.pt \文件
YangLabHKUST/SpatialScope#17 · opened on Apr 29, 2025
3
How to annotate an empty spot?
YangLabHKUST/SpatialScope#16 · opened on Oct 27, 2024
RAM costs of running Mouse-MOp-MERFISH.ipynb
YangLabHKUST/SpatialScope#15 · opened on Apr 25, 2024
1
Is the Ray framework essential for Cell type identification on a single node with 2 GPUs?
YangLabHKUST/SpatialScope#14 · opened on Apr 15, 2024
1
file not found
YangLabHKUST/SpatialScope#13 · opened on Mar 21, 2024
How to perform the imputation task on a new dataset without cell types
YangLabHKUST/SpatialScope#11 · opened on Feb 21, 2024
2
Out of Memory Issue During Cell Type Identification Step on 256GB RAM Machine
YangLabHKUST/SpatialScope#10 · opened on Feb 11, 2024
1
Does SpatialScope support distributed training using GPUs from multiple nodes?
YangLabHKUST/SpatialScope#7 · opened on Jan 29, 2024
Failed to read dashboard log: [Errno 2] No such file or directory: '/tmp/ray/session_2024-01-12_10-40-45_726841_46882/logs/dashboard.log'
YangLabHKUST/SpatialScope#5 · opened on Jan 12, 2024
1
conda environment configuration issues
YangLabHKUST/SpatialScope#4 · opened on Jan 10, 2024
2
Cannot reproduce the imputation results of SpatialScope
YangLabHKUST/SpatialScope#3 · opened on Dec 21, 2023
11
Memory requirement for Nuclei Segmentation step
YangLabHKUST/SpatialScope#2 · opened on Dec 20, 2023
1