From c3d30262e55f26fb6fe3672d5ea0509050e9d4ed Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 13 Oct 2026 22:37:49 +0000 Subject: [PATCH 1/2] Bump the pre-commit-hooks group with 3 updates Bumps the pre-commit-hooks group with 3 updates: [https://github.com/tox-dev/pyproject-fmt](https://github.com/tox-dev/pyproject-fmt), [https://github.com/executablebooks/mdformat](https://github.com/executablebooks/mdformat) and [https://github.com/astral-sh/ruff-pre-commit](https://github.com/astral-sh/ruff-pre-commit). Updates `https://github.com/tox-dev/pyproject-fmt` from v2.29.4 to 2.30.1 - [Release notes](https://github.com/tox-dev/pyproject-fmt/releases) - [Commits](https://github.com/tox-dev/pyproject-fmt/compare/v2.29.4...v2.30.1) Updates `https://github.com/executablebooks/mdformat` from 0.7.18 to 1.0.0 - [Commits](https://github.com/executablebooks/mdformat/compare/0.7.18...1.0.0) Updates `https://github.com/astral-sh/ruff-pre-commit` from v0.16.5 to 0.16.10 - [Release notes](https://github.com/astral-sh/ruff-pre-commit/releases) - [Commits](https://github.com/astral-sh/ruff-pre-commit/compare/v0.16.5...v0.16.10) --- updated-dependencies: - dependency-name: https://github.com/tox-dev/pyproject-fmt dependency-version: 2.30.1 dependency-type: direct:production dependency-group: pre-commit-hooks - dependency-name: https://github.com/executablebooks/mdformat dependency-version: 1.0.0 dependency-type: direct:production update-type: version-update:semver-major dependency-group: pre-commit-hooks - dependency-name: https://github.com/astral-sh/ruff-pre-commit dependency-version: 0.16.10 dependency-type: direct:production dependency-group: pre-commit-hooks ... Signed-off-by: dependabot[bot] --- .pre-commit-config.yaml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 9d2522f..2bafea4 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -15,7 +15,7 @@ repos: - id: check-yaml - id: detect-private-key - repo: https://github.com/tox-dev/pyproject-fmt - rev: "v2.29.4" + rev: "v2.30.1" hooks: - id: pyproject-fmt - repo: https://github.com/codespell-project/codespell @@ -31,7 +31,7 @@ repos: tests/data/CP_tutorial_3D_noise_nuclei_segmentation/output/MyExpt_Experiment\.csv )$ - repo: https://github.com/executablebooks/mdformat - rev: 0.7.18 + rev: 1.0.0 hooks: - id: mdformat additional_dependencies: @@ -50,7 +50,7 @@ repos: hooks: - id: actionlint - repo: https://github.com/astral-sh/ruff-pre-commit - rev: "v0.16.5" + rev: "v0.16.10" hooks: - id: ruff-format - id: ruff-check From 9dd3ed79e11c514addbcddd7622be2496c9d8f8e Mon Sep 17 00:00:00 2001 From: d33bs Date: Fri, 16 Oct 2026 13:42:32 -0600 Subject: [PATCH 2/2] fixes --- .github/workflows/dependabot.yml | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/.github/workflows/dependabot.yml b/.github/workflows/dependabot.yml index 4800a91..b564efa 100644 --- a/.github/workflows/dependabot.yml +++ b/.github/workflows/dependabot.yml @@ -30,6 +30,12 @@ jobs: python-version: "3.11" - name: Install the latest version of uv uses: astral-sh/setup-uv@v7 + # VTK/pyvista's built-in headless rendering has segfaulted + # intermittently on ubuntu-24.04 runners (see the same step in + # run-tests.yml); a real Xvfb display avoids that here too, since + # pre-commit's code-cov-gen hook runs the full pytest suite. + - name: Setup headless display + uses: pyvista/setup-headless-display-action@v5 # run pre-commmit checks using prek for faster execution - uses: j178/prek-action@v3.0.0 id: pre_commit