Skip to content
@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

Pinned Loading

  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 398 164

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 27 16

Repositories

Showing 10 of 516 repositories
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder's past year of commit activity
    TypeScript 22 BSD-3-Clause 10 56 9 Updated Sep 28, 2026
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis's past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Sep 28, 2026
  • ephys-analysis-tools Public

    Code base generating formatted data tables that streamlines data analysis process for ephys production metadata.

    AllenInstitute/ephys-analysis-tools's past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Sep 28, 2026
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims's past year of commit activity
    Python 0 MIT 1 4 0 Updated Sep 28, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES's past year of commit activity
    IGOR Pro 30 11 288 5 Updated Sep 28, 2026
  • biodata-schema Public

    Complete and accurate metadata for bioscience

    AllenInstitute/biodata-schema's past year of commit activity
    Python 1 MIT 0 65 2 Updated Sep 28, 2026
  • AllenInstitute/OCS-Submission-Capsule-API's past year of commit activity
    Python 0 0 0 0 Updated Sep 28, 2026
  • CCF-MAP Public

    Primer and examples for using templates and atlases in HMBA/BICAN

    AllenInstitute/CCF-MAP's past year of commit activity
    HTML 2 0 0 0 Updated Sep 28, 2026
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader's past year of commit activity
    Python 9 MIT 1 0 7 Updated Sep 28, 2026
  • zarr-vectors-tools Public

    Tools and workflows based on the zarr-vectors-py API.

    AllenInstitute/zarr-vectors-tools's past year of commit activity
    Python 6 2 1 1 Updated Sep 26, 2026