All pull requests

Pull requests

• Add agent-discoverable metadata and spatial-mapping skill for coding agents

  #442·vitkl opened May 21, 2026Contributor·7 of 9 tasks·

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• Update Dockerfile

  #420·vitkl opened Sep 24, 2025Contributor·

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• High resolution model & distance function prior [draft]

  #337·vitkl opened Nov 26, 2023Contributor·

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  1

• [pre-commit.ci] pre-commit autoupdate

  #333·pre-commit-ci[bot] opened Nov 13, 2023Bot·

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• Independent residual factor model

  #179·vitkl opened Jul 12, 2022Contributor·

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• Option to train the model with residual non-negative factors

  #178·vitkl opened Jul 11, 2022Contributor·

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• Location-specific sampling of cell type signatures and background

  #175·vitkl opened Jul 6, 2022Contributor·

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• Cell-type specific amortising NN & necessary changes to AutoGuide

  #159·vitkl opened May 18, 2022Contributor·

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• Exclusion of observed variables from posterior

  #144·vitkl opened Apr 16, 2022Contributor·

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  13

• Posterior quantile detects minibatch plate vars

  #135·vitkl opened Mar 23, 2022Contributor·

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• Option to treat y_s as detection probability

  #118·vitkl opened Jan 30, 2022Contributor·

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• Changing AutoNormal -> AutoNormalMessenger

  enhancement
  #114·vitkl opened Jan 25, 2022Contributor·

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• Support for multiplicative effects for arbitrary covariates in the spatial data

  discussion
  #96·vitkl opened Nov 16, 2021Contributor·

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• Cell2location model that considers cell type hierarchy when mapping

  replaced/inactiveWIP
  #83·vitkl opened Oct 26, 2021Contributor·

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  1

• Continuous gene expression model (Gamma)

  discussion
  #76·vitkl opened Oct 7, 2021Contributor·

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