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Compatible arax biolink version with other components - #179

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maximusunc merged 3 commits into
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compatible-arax-biolink-version-with-other-containers
Oct 21, 2026
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maximusunc merged 3 commits into
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compatible-arax-biolink-version-with-other-containers

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mohsenht requested a review from maximusunc October 21, 2026 16:21
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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 53.53%. Comparing base (9801020) to head (3c19eb9).
⚠️ Report is 38 commits behind head on devel.

Files with missing lines Coverage Δ
shepherd_utils/config.py 98.75% <ø> (-0.01%) ⬇️
workers/arax_pathfinder/worker.py 65.38% <100.00%> (+0.16%) ⬆️

... and 12 files with indirect coverage changes


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@maximusunc
maximusunc merged commit afe9a53 into devel Oct 21, 2026
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@maximusunc
maximusunc deleted the compatible-arax-biolink-version-with-other-containers branch October 21, 2026 16:39
maximusunc pushed a commit that referenced this pull request Oct 27, 2026
- The resilience probe, plan and intake tests (#186) keep trapi_1.6's port
  from #187, made from #186's final state and adapted to 1.6's intake.
- #179 points the ARAX pathfinder's BiolinkHelper at the TRAPI 2.0 models'
  Biolink version (shepherd_utils.trapi, not on this branch); it keeps
  arax_biolink_version (v4.2.5) here, matching the in-process ARAX's 4.2.5.
- The compose changes (ARS behind the `ars` profile, compose.test.yml's
  limits folded into compose.yml) come in as they are.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01TtsBikU9y9AFQ5uu9tcioz
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2 participants