docker pull ghcr.io/ccpbiosim/biosimdb-interface:2026-09-17-interface-1.0.0-schema-1.0.0-extractor-0.0.16
docker run -p 5002:5002 --env-file biosimdb_interface/.env ghcr.io/ccpbiosim/biosimdb-interface:2026-09-17-interface-1.0.0-schema-1.0.0-extractor-0.0.16

[2026-10-08 09:53:55 +0000] [8] [INFO] Worker exiting (pid: 8)
[2026-10-08 09:53:56 +0000] [32] [INFO] Booting worker with pid: 32
[2026-10-08 09:53:56 +0000] [7] [INFO] Control socket listening at /home/biosim/.gunicorn/gunicorn.ctl
[2026-10-08 09:54:28 +0000] [7] [CRITICAL] WORKER TIMEOUT (pid:32)
[2026-10-08 09:54:28 +0000] [32] [ERROR] Error handling request POST /biosimdb/extract_metadata
Traceback (most recent call last):
  File "/venv/lib/python3.12/site-packages/gunicorn/workers/sync.py", line 141, in handle
    self.handle_request(listener, req, client, addr)
  File "/venv/lib/python3.12/site-packages/gunicorn/workers/sync.py", line 184, in handle_request
    respiter = self.wsgi(environ, resp.start_response)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/venv/lib/python3.12/site-packages/flask/app.py", line 1536, in __call__
    return self.wsgi_app(environ, start_response)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/venv/lib/python3.12/site-packages/flask/app.py", line 1511, in wsgi_app
    response = self.full_dispatch_request()
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/venv/lib/python3.12/site-packages/flask/app.py", line 917, in full_dispatch_request
    rv = self.dispatch_request()
         ^^^^^^^^^^^^^^^^^^^^^^^
  File "/venv/lib/python3.12/site-packages/flask/app.py", line 902, in dispatch_request
    return self.ensure_sync(self.view_functions[rule.endpoint])(**view_args)  # type: ignore[no-any-return]
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/venv/lib/python3.12/site-packages/biosimdb_interface/form/extract.py", line 70, in extract_metadata
    workflow_id = request.form.get("workflow_id")
                  ^^^^^^^^^^^^
  File "/venv/lib/python3.12/site-packages/werkzeug/utils.py", line 100, in __get__
    value = self.fget(obj)  # type: ignore
            ^^^^^^^^^^^^^^
  File "/venv/lib/python3.12/site-packages/werkzeug/wrappers/request.py", line 445, in form
    self._load_form_data()
  File "/venv/lib/python3.12/site-packages/flask/wrappers.py", line 198, in _load_form_data
    super()._load_form_data()
  File "/venv/lib/python3.12/site-packages/werkzeug/wrappers/request.py", line 271, in _load_form_data
    data = parser.parse(
           ^^^^^^^^^^^^^
  File "/venv/lib/python3.12/site-packages/werkzeug/formparser.py", line 242, in parse
    return parse_func(stream, mimetype, content_length, options)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/venv/lib/python3.12/site-packages/werkzeug/formparser.py", line 267, in _parse_multipart
    form, files = parser.parse(stream, boundary, content_length)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/venv/lib/python3.12/site-packages/werkzeug/formparser.py", line 368, in parse
    for data in _chunk_iter(stream.read, self.buffer_size):
  File "/venv/lib/python3.12/site-packages/werkzeug/formparser.py", line 423, in _chunk_iter
    data = read(size)
           ^^^^^^^^^^
  File "/venv/lib/python3.12/site-packages/gunicorn/http/body.py", line 227, in read
    data = self.reader.read(1024)
           ^^^^^^^^^^^^^^^^^^^^^^
  File "/venv/lib/python3.12/site-packages/gunicorn/http/body.py", line 137, in read
    data = self.unreader.read()
           ^^^^^^^^^^^^^^^^^^^^
  File "/venv/lib/python3.12/site-packages/gunicorn/http/unreader.py", line 44, in read
    ret = self.buf.getvalue()
          ^^^^^^^^^^^^^^^^^^^
  File "/venv/lib/python3.12/site-packages/gunicorn/workers/base.py", line 199, in handle_abort
    sys.exit(1)
SystemExit: 1