Issues

• Low probabilities in the cell × spot matrix

  JinmiaoChenLab/GraphST#58 · Filter by author LuisHeinzlmeier opened on Jun 15, 2026

• Does graph ST work with multiple patient integration?

  JinmiaoChenLab/GraphST#57 · Filter by author smk5g5 opened on Feb 20, 2026

• mclust error: Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent

  JinmiaoChenLab/GraphST#56 · Filter by author marcouderzo opened on Jan 7, 2026
  1

• Does GraphST work for Visium HD or Xenium data?

  JinmiaoChenLab/GraphST#55 · Filter by author miko-798 opened on Dec 26, 2025

• Reproduce results of hippocampus and MOB Stereo-seq datasets

  JinmiaoChenLab/GraphST#54 · Filter by author xieaq opened on Oct 9, 2025

• Does GraphST consider the information of 3D coordinates when training the model?

  JinmiaoChenLab/GraphST#53 · Filter by author jasonleongbio opened on Sep 17, 2025

• Aligment issue

  JinmiaoChenLab/GraphST#52 · Filter by author CAUiKUN opened on Jun 12, 2025

• keras-nightly install

  JinmiaoChenLab/GraphST#51 · Filter by author ThesecondtoNone opened on Apr 29, 2025

• GPU configuration for large dataset

  JinmiaoChenLab/GraphST#50 · Filter by author ajitashree opened on Apr 5, 2025
  2

• 能否提供一下论文中下采样过后的人类乳腺癌的数据集，谢谢

  JinmiaoChenLab/GraphST#48 · Filter by author s2448587606 opened on Mar 6, 2025

• Less arbitrary way to determine the number of clusters

  JinmiaoChenLab/GraphST#47 · Filter by author ShaowenJCornell opened on Feb 24, 2025

• How to set the number of CPUs to be used

  JinmiaoChenLab/GraphST#46 · Filter by author yonglpy opened on Feb 17, 2025

• retain_percent variable not passed to extract_top_value function

  JinmiaoChenLab/GraphST#45 · Filter by author edgarfelizmenio opened on Feb 17, 2025

• server spec

  JinmiaoChenLab/GraphST#44 · Filter by author parkjooyoung99 opened on Jan 30, 2025

• Input parameter dim_input is not actually used, and always 3000 highly variable genes in function preprocess.

  JinmiaoChenLab/GraphST#43 · Filter by author RobinZe opened on Dec 17, 2024

• Problems related to the adjacency matrix:

  JinmiaoChenLab/GraphST#42 · Filter by author Kanxiing opened on Dec 11, 2024

• no matter cluser or deconvolution you always use the top 3000 genes as the feature.

  JinmiaoChenLab/GraphST#41 · Filter by author StackChan opened on Oct 12, 2024

• vertical and horizontal integration of multiple tissue slices

  JinmiaoChenLab/GraphST#39 · Filter by author huixiaaaa opened on Aug 28, 2024

• Normalization issue on Stereo-seq tutorial

  JinmiaoChenLab/GraphST#38 · Filter by author tvegawaichman opened on Aug 12, 2024

• Model Implementation Appears to Differ from Publication

  JinmiaoChenLab/GraphST#37 · Filter by author zdanaceau opened on Jul 30, 2024

• where can i get Mouse embryo dataset?

  JinmiaoChenLab/GraphST#36 · Filter by author amssljc opened on Jul 5, 2024
  2

• Maximum number of cells tested by GraphST

  JinmiaoChenLab/GraphST#35 · Filter by author rocketeer1998 opened on Jun 24, 2024
  1

• specify batch size

  JinmiaoChenLab/GraphST#34 · Filter by author jairaj-mathur opened on May 29, 2024
  1

• Email address update

  JinmiaoChenLab/GraphST#33 · Filter by author longyahui opened on May 13, 2024

• take 3D spots position into account

  JinmiaoChenLab/GraphST#32 · Filter by author wanghf810501 opened on Apr 23, 2024
  1