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@LUMC

Leiden University Medical Center

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  1. pytest-workflow pytest-workflow Public

    Configure workflow/pipeline tests using yaml files.

    Python 71 10

  2. EfDS EfDS Public

    Materials for Essentials for Data Science, a course of Statistics and Data Science master at Leiden University.

    Jupyter Notebook 43 43

  3. kPAL kPAL Public

    Analysis toolkit and programming library for k-mer profiles

    Python 30 5

  4. fastqsplitter fastqsplitter Public

    Splits fastq files evenly

    Python 24 8

  5. dgeAnalysis dgeAnalysis Public

    R package with Shiny application for DGE analysis

    R 13 5

  6. ribosome-profiling-analysis-framework ribosome-profiling-analysis-framework Public

    Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis, detecting ORFs.

    PHP 12 5

Repositories

Showing 10 of 75 repositories
  • mvrem Public

    Multivariate random-effects models.

    LUMC/mvrem's past year of commit activity
    0 MIT 0 0 0 Updated Oct 16, 2026
  • OpalLUMCADM Public

    R package to interact between Opal and R

    LUMC/OpalLUMCADM's past year of commit activity
    R 1 AGPL-3.0 0 1 0 Updated Oct 13, 2026
  • cram-archiver Public
    LUMC/cram-archiver's past year of commit activity
    Python 1 AGPL-3.0 0 1 0 Updated Sep 16, 2026
  • HAMLET Public

    RNA-seq pipeline for AML diagnostics developed in collaboration with the LUMC Hematology department

    LUMC/HAMLET's past year of commit activity
    Python 12 MIT 7 1 0 Updated Jul 14, 2026
  • EfDS Public

    Materials for Essentials for Data Science, a course of Statistics and Data Science master at Leiden University.

    LUMC/EfDS's past year of commit activity
    Jupyter Notebook 43 GPL-3.0 43 0 0 Updated May 18, 2026
  • array-as-vcf Public
    LUMC/array-as-vcf's past year of commit activity
    Python 1 MIT 1 1 1 Updated Apr 13, 2026
  • rose-dt Public

    Reciprocal Soft-Clip Events Detection Tool

    LUMC/rose-dt's past year of commit activity
    Rust 0 0 0 0 Updated Mar 30, 2026
  • dbexport Public

    Export Oracle database objects (packages, stored procedures, triggers, etc.) to SQL files.

    LUMC/dbexport's past year of commit activity
    Java 0 MIT 0 0 0 Updated Feb 19, 2026
  • rcourse Public

    Using R for Data Analysis

    LUMC/rcourse's past year of commit activity
    R 4 GPL-3.0 1 7 0 Updated Dec 15, 2025
  • fmb2txt Public

    Convert Oracle Forms FMB source files into XML and readable TXT files

    LUMC/fmb2txt's past year of commit activity
    Java 0 MIT 1 0 0 Updated Jun 12, 2025
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