Issues

• biopython error

  McTavishLab/physcraper#183 · Filter by author lskatz opened on Apr 12, 2023

• KeyError: '^ot:ottId'

  McTavishLab/physcraper#182 · Filter by author LunaSare opened on Dec 20, 2021

• output - file with taxon names that are all gaps in input alignment

  McTavishLab/physcraper#178 · Filter by author LunaSare opened on Oct 28, 2021
  1

• documenttaion - add docker to install instructions

  McTavishLab/physcraper#177 · Filter by author LunaSare opened on Oct 28, 2021
  1

  

• add jupyter notebook to dockerfile

  McTavishLab/physcraper#176 · Filter by author LunaSare opened on Oct 26, 2021
  3

• Write implementation section as md

  McTavishLab/physcraper#175 · Filter by author LunaSare opened on Aug 11, 2021

• Add a Troubleshooting page

  McTavishLab/physcraper#174 · Filter by author LunaSare opened on Aug 11, 2021

• automatically generate a file with all citations

  McTavishLab/physcraper#173 · Filter by author LunaSare opened on Aug 10, 2021

• reviewer 1 - comment 7 - aminoacid alignments

  enhancementpyopensci-review
  McTavishLab/physcraper#154 · Filter by author LunaSare opened on Jan 26, 2021
  1

• reviwer 1 - comment 6 - Progress bar for blast runs

  enhancementpyopensci-review
  McTavishLab/physcraper#146 · Filter by author snacktavish opened on Dec 2, 2020
  1

• Tree not found?

  McTavishLab/physcraper#138 · Filter by author mkandziora opened on Jul 24, 2020
  2

• ot_ws_wrapper NoneType

  McTavishLab/physcraper#137 · Filter by author mkandziora opened on Jul 24, 2020
  3

• add do_not_align option

  McTavishLab/physcraper#136 · Filter by author snacktavish opened on Jul 24, 2020

• writeinfofiles is not defined

  McTavishLab/physcraper#133 · Filter by author mkandziora opened on Jul 21, 2020
  2

• no_est functionality

  McTavishLab/physcraper#132 · Filter by author mkandziora opened on Jul 18, 2020
  2

  

• output nexml

  McTavishLab/physcraper#129 · Filter by author snacktavish opened on Jul 10, 2020

• relabel script

  enhancement
  McTavishLab/physcraper#124 · Filter by author snacktavish opened on Jul 1, 2020
  1

  

• OpenTree names for no ncbi

  McTavishLab/physcraper#120 · Filter by author snacktavish opened on Jun 25, 2020

• Check Treebase downloads for concatenated loci

  McTavishLab/physcraper#116 · Filter by author snacktavish opened on Jun 23, 2020

• Define namespace

  McTavishLab/physcraper#115 · Filter by author snacktavish opened on Jun 19, 2020

• Automate updating taxonomy and ottids in synth

  McTavishLab/physcraper#111 · Filter by author snacktavish opened on Jun 17, 2020

• Check if phylogeny information exists in OpenTree

  McTavishLab/physcraper#110 · Filter by author snacktavish opened on Jun 15, 2020

• not recognizing blasted sequences

  McTavishLab/physcraper#108 · Filter by author LunaSare opened on Jun 10, 2020

• alignment import fail

  McTavishLab/physcraper#107 · Filter by author LunaSare opened on Jun 10, 2020

• rooting when search taxon is inclusive of initial outgroup

  McTavishLab/physcraper#102 · Filter by author LunaSare opened on Jun 4, 2020