Repository navigation

All pull requests

Labels (20)Milestones (0)New pull request

Open

(26)

Closed

(235)

Nwb fixes
#1274carsen-stringer opened Sep 20, 2026Member
Port nd2 reader to the 1.x reader API and expose it in the GUI
#1272rysk-t opened Sep 9, 2026
extract_traces: build sparse-mask indices as integer tensors
#1268cindykrafft opened Sep 2, 2026
Classifier: keep feature values at the training minimum in the first bin
#1267cindykrafft opened Sep 2, 2026
bidiphase.shift: copy the source slice before the overlapping in-place assignment
#1266cindykrafft opened Sep 2, 2026
Address high memory denoise PCA requirement
#1264chriski777 opened Aug 30, 2026Collaborator
Honor force_sktiff in ome_to_binary
#1262adityasingh2400 opened Aug 5, 2026
Write channel 2 registered tiffs to reg_tif_chan2
#1261adityasingh2400 opened Aug 5, 2026
Support a single nonrigid block along a dimension
#1260adityasingh2400 opened Aug 5, 2026
Use the real-input FFT for registration phase correlation
#1257bendichter opened Jul 16, 2026
Implement temporal_smooth in pytorch
#1255ethanbb opened Jul 1, 2026
Implement ROI filtering by range and class with keyboard skipping in GUI
#1249AddadyTom opened Jun 8, 2026
Refactor SBX binary conversion for current IO flow
#1242ytsimon2004 opened May 29, 2026
Add sync toggle and opposite-view ROI outline
#1241SomeKindOfDuck opened May 25, 2026
Fix assign_reg_io for ndarray input
#1226ethanbb opened Apr 13, 2026
2
Restore default_ops in suite2p module?
#1225StephenThornquist opened Apr 13, 2026
1
Bug Fix: Refactor return value and update mask_window calculation
#1218rbondare opened Mar 5, 2026
1
Update drawroi.py so that newly drawn ROIs are appended at the end
#1189mkzhou00 opened Aug 12, 2025
Gui improvement
#1164AhmedJamali opened Feb 20, 2025
Fixing manual cell selection -> extraction
#1162horsto opened Feb 12, 2025
Python 3.12 Compatibility Issue
#1159fdeguire03 opened Jan 29, 2025
Fix File Path Handling for Usernames with Spaces
#1151felixsmli opened Oct 12, 2024
Dummy PR for review
#1146Zachary-Ip opened Sep 25, 2024
force integer value for np.arange when indexing h5 file with 4D and 5D data
#1112knowblesse opened Apr 1, 2024
2
Documentation and refactoring of suite2p/detection/sparsedetect.py
#1085nspiller opened Jan 26, 2024

Navigation Menu

Repository navigation

All pull requests

Nwb fixes

Port nd2 reader to the 1.x reader API and expose it in the GUI

extract_traces: build sparse-mask indices as integer tensors

Classifier: keep feature values at the training minimum in the first bin

bidiphase.shift: copy the source slice before the overlapping in-place assignment

Address high memory denoise PCA requirement

Honor force_sktiff in ome_to_binary

Write channel 2 registered tiffs to reg_tif_chan2

Support a single nonrigid block along a dimension

Use the real-input FFT for registration phase correlation

Implement temporal_smooth in pytorch

Implement ROI filtering by range and class with keyboard skipping in GUI

Refactor SBX binary conversion for current IO flow

Add sync toggle and opposite-view ROI outline

Fix assign_reg_io for ndarray input

Restore `default_ops` in `suite2p` module?

Bug Fix: Refactor return value and update mask_window calculation

Update drawroi.py so that newly drawn ROIs are appended at the end

Gui improvement

Fixing manual cell selection -> extraction

Python 3.12 Compatibility Issue

Fix File Path Handling for Usernames with Spaces

Dummy PR for review

force integer value for `np.arange` when indexing h5 file with 4D and 5D data

Documentation and refactoring of suite2p/detection/sparsedetect.py

Pull requests