Restore some of disabled *Tests

.gitattributes

@@ -15,3 +15,7 @@ configure-from-env text eol=lf
 
 # Binary files are left untouched
 *.jar           binary
+*.dcm           binary
+
+# NCPDP fixtures delimit with control characters (0x1C/0x1D/0x1E), not line breaks
+/server/tests/test-ncpdp-*-input.txt binary

ci/README.md

@@ -51,20 +51,40 @@ The rest are optional assertions against the message the channel produced:
 | `source_raw` | Raw source payload |
 | `source_encoded` | Encoded source payload |
 | `source_status` | Source status |
+| `source_raw` | Raw source payload as stored |
 | `source_response` | Source response payload |
 | `source_transformed` | Transformed source payload |
+| `source_processing_error` | Processing error recorded against the source |
 | `destNN_raw` | Raw payload for destination `NN` |
 | `destNN_encoded` | Encoded payload for destination `NN` |
 | `destNN` | Sent payload for destination `NN` |
 | `destNN_transformed` | Transformed payload for destination `NN` |
-| `destNN_response` | Response payload from destination `NN` |
+| `destNN_response` | Response payload from destination `NN`, before its response transformer |
+| `destNN_processed_response` | Response payload for destination `NN` after its response transformer |
+| `destNN_processing_error` | Processing error recorded against destination `NN` |
 | `destNN_metadata.yml` | Selected metadata for destination `NN` |
 | `destNN_status` | Status for destination `NN` |
+| `attachmentNN` | Content of attachment `NN` |
+| `attachmentNN_type` | MIME type of attachment `NN` |
 
 `NN` is the destination connector's metadata ID: `dest01` is the first
 destination, `dest02` the second, and so on. Metadata files are YAML mappings; list
-only the keys that matter to the test. Content assertions are byte-for-byte, except
-that `((ANY))` matches variable content such as generated IDs or timestamps.
+only the keys that matter to the test. A key whose value is `((NONE))` asserts that
+nothing is stored under it, which is how a custom metadata column with no value is
+asserted. A TIMESTAMP custom metadata column is compared as its UTC instant, so write
+it as `2010-01-02T13:01:02Z`. Content assertions are byte-for-byte, except
+that `((ANY))` matches variable content such as generated IDs or timestamps. A content
+assertion file whose entire contents are `((NONE))` asserts the opposite: that the server
+stored no such content at all, which is not the same as storing an empty string.
+
+For an attachment, `NN` is a position rather than an ID: `attachment01` is the attachment
+whose `${ATTACH:id}` token appears first in the source raw content, `attachment02` the next,
+and any attachment the message does not reference comes after those, ordered by ID. The
+server's own list is ordered by ID, which is a generated UUID, so it is not something a
+fixture can count along. An `attachmentNN` file holds raw bytes and is compared byte for
+byte, so it can hold an image or any other binary attachment, and `((NONE))` in it asserts
+that there is no attachment in that position - which is also how a fixture pins down how
+many attachments there are.
 
 A fixture case runs in every configuration by default. To limit it, add a
 `configurations` file at the case root with one configuration name per line:
@@ -116,6 +136,10 @@ Put hand-written JUnit 5 tests in
 the fixture tests and are appropriate for multi-step workflows, computed
 expectations, or assertions that do not fit the fixture files.
 
+A Java test's channels go in `smoketest/src/test/resources/channels/`, not under
+`ci/tests/`, which is the fixture generator's tree; `Harness.deploy` loads either from
+the classpath.
+
 ## Run Locally
 
 Run every configuration:

ci/configurations/alpine-temurin21-mysql.compose.yml

@@ -22,7 +22,7 @@ services:
         condition: service_healthy
     environment:
       DATABASE: mysql
-      DATABASE_URL: jdbc:mysql://db:3306/mirthdb
+      DATABASE_URL: jdbc:mysql://db:3306/mirthdb?sessionVariables=transaction_isolation='READ-COMMITTED'
       DATABASE_USERNAME: mirthdb
       DATABASE_PASSWORD: mirthdb
       DATABASE_MAX_CONNECTIONS: 20

ci/tests/101-raw-no-op/README.md

@@ -0,0 +1,7 @@
+# 101-raw-no-op
+
+A channel that does nothing: the RAW data type at both ends, no filter or transformer elements,
+Channel Reader to a Channel Writer templated on `${message.encodedData}`.
+
+With no filter or transformer the engine skips serialization altogether and the encoded content is
+the raw content, so `dest01` asserts the payload reaches the destination unchanged.

ci/tests/110-hl7-no-op/README.md

@@ -0,0 +1,8 @@
+# 110-hl7-no-op
+
+The same no-op channel as 101 with the HL7 v2 data type at both ends, responding with
+`Auto-generate (Destinations completed)`.
+
+- `dest01_metadata.yml` - the custom metadata columns the HL7 serializer fills in from MSH-4 and
+  MSH-9 on its own, with no transformer having run.
+- `source_response` - the generated ACK, echoing the inbound MSH fields and MSA-2.

ci/tests/120-filter-transformer/README.md

@@ -0,0 +1,13 @@
+# 120-filter-transformer
+
+Filter and transformer outcomes, on the RAW data type so that the transformed and encoded content
+are exactly what the script left in `msg`.
+
+- `01-source-filter` - a JavaScript rule rejecting messages containing `REJECT`. An accepted
+  message is TRANSFORMED and reaches `dest01`; a rejected one is FILTERED, and its transformed
+  content is stored all the same, because the filter runs after the content is handed to the script.
+- `02-source-transformer` - a JavaScript step prefixing the message. The transformed content is the
+  script's output, and RAW encodes to it unchanged, so the destination receives the same thing.
+- `03-transformer-error` - a step that throws, giving ERROR.
+
+The case of no filter and no transformer at all is 101 and 110.

ci/tests/120-filter-transformer/channels/01-source-filter/channel.xml

@@ -0,0 +1,192 @@
+<channel version="4.5.2">
+  <id>8f1d2c40-1a11-4a1e-9f9b-2c0a5a4e1001</id>
+  <nextMetaDataId>2</nextMetaDataId>
+  <name>filter-transformer-source-filter</name>
+  <description></description>
+  <revision>1</revision>
+  <sourceConnector version="4.5.2">
+    <metaDataId>0</metaDataId>
+    <name>sourceConnector</name>
+    <properties class="com.mirth.connect.connectors.vm.VmReceiverProperties" version="4.5.2">
+      <pluginProperties/>
+      <sourceConnectorProperties version="4.5.2">
+        <responseVariable>None</responseVariable>
+        <respondAfterProcessing>true</respondAfterProcessing>
+        <processBatch>false</processBatch>
+        <firstResponse>false</firstResponse>
+        <processingThreads>1</processingThreads>
+        <resourceIds class="linked-hash-map">
+          <entry>
+            <string>Default Resource</string>
+            <string>[Default Resource]</string>
+          </entry>
+        </resourceIds>
+        <queueBufferSize>1000</queueBufferSize>
+      </sourceConnectorProperties>
+    </properties>
+    <transformer version="4.5.2">
+      <elements/>
+      <inboundDataType>RAW</inboundDataType>
+      <outboundDataType>RAW</outboundDataType>
+      <inboundProperties class="com.mirth.connect.plugins.datatypes.raw.RawDataTypeProperties" version="4.5.2">
+        <batchProperties class="com.mirth.connect.plugins.datatypes.raw.RawBatchProperties" version="4.5.2">
+          <splitType>JavaScript</splitType>
+          <batchScript></batchScript>
+        </batchProperties>
+      </inboundProperties>
+      <outboundProperties class="com.mirth.connect.plugins.datatypes.raw.RawDataTypeProperties" version="4.5.2">
+        <batchProperties class="com.mirth.connect.plugins.datatypes.raw.RawBatchProperties" version="4.5.2">
+          <splitType>JavaScript</splitType>
+          <batchScript></batchScript>
+        </batchProperties>
+      </outboundProperties>
+    </transformer>
+    <filter version="4.5.2">
+      <elements>
+        <com.mirth.connect.plugins.javascriptrule.JavaScriptRule version="4.5.2">
+          <name>Reject flagged messages</name>
+          <sequenceNumber>0</sequenceNumber>
+          <enabled>true</enabled>
+          <operator>NONE</operator>
+          <script>return msg.indexOf('REJECT') &lt; 0;</script>
+        </com.mirth.connect.plugins.javascriptrule.JavaScriptRule>
+      </elements>
+    </filter>
+    <transportName>Channel Reader</transportName>
+    <mode>SOURCE</mode>
+    <enabled>true</enabled>
+    <waitForPrevious>true</waitForPrevious>
+  </sourceConnector>
+  <destinationConnectors>
+    <connector version="4.5.2">
+      <metaDataId>1</metaDataId>
+      <name>Destination 1</name>
+      <properties class="com.mirth.connect.connectors.vm.VmDispatcherProperties" version="4.5.2">
+        <pluginProperties/>
+        <destinationConnectorProperties version="4.5.2">
+          <queueEnabled>false</queueEnabled>
+          <sendFirst>false</sendFirst>
+          <retryIntervalMillis>10000</retryIntervalMillis>
+          <regenerateTemplate>false</regenerateTemplate>
+          <retryCount>0</retryCount>
+          <rotate>false</rotate>
+          <includeFilterTransformer>false</includeFilterTransformer>
+          <threadCount>1</threadCount>
+          <threadAssignmentVariable></threadAssignmentVariable>
+          <validateResponse>false</validateResponse>
+          <resourceIds class="linked-hash-map">
+            <entry>
+              <string>Default Resource</string>
+              <string>[Default Resource]</string>
+            </entry>
+          </resourceIds>
+          <queueBufferSize>1000</queueBufferSize>
+          <reattachAttachments>true</reattachAttachments>
+        </destinationConnectorProperties>
+        <channelId>none</channelId>
+        <channelTemplate>${message.encodedData}</channelTemplate>
+        <mapVariables/>
+      </properties>
+      <transformer version="4.5.2">
+        <elements/>
+        <inboundDataType>RAW</inboundDataType>
+        <outboundDataType>RAW</outboundDataType>
+        <inboundProperties class="com.mirth.connect.plugins.datatypes.raw.RawDataTypeProperties" version="4.5.2">
+          <batchProperties class="com.mirth.connect.plugins.datatypes.raw.RawBatchProperties" version="4.5.2">
+            <splitType>JavaScript</splitType>
+            <batchScript></batchScript>
+          </batchProperties>
+        </inboundProperties>
+        <outboundProperties class="com.mirth.connect.plugins.datatypes.raw.RawDataTypeProperties" version="4.5.2">
+          <batchProperties class="com.mirth.connect.plugins.datatypes.raw.RawBatchProperties" version="4.5.2">
+            <splitType>JavaScript</splitType>
+            <batchScript></batchScript>
+          </batchProperties>
+        </outboundProperties>
+      </transformer>
+      <responseTransformer version="4.5.2">
+        <elements/>
+        <inboundDataType>RAW</inboundDataType>
+        <outboundDataType>RAW</outboundDataType>
+        <inboundProperties class="com.mirth.connect.plugins.datatypes.raw.RawDataTypeProperties" version="4.5.2">
+          <batchProperties class="com.mirth.connect.plugins.datatypes.raw.RawBatchProperties" version="4.5.2">
+            <splitType>JavaScript</splitType>
+            <batchScript></batchScript>
+          </batchProperties>
+        </inboundProperties>
+        <outboundProperties class="com.mirth.connect.plugins.datatypes.raw.RawDataTypeProperties" version="4.5.2">
+          <batchProperties class="com.mirth.connect.plugins.datatypes.raw.RawBatchProperties" version="4.5.2">
+            <splitType>JavaScript</splitType>
+            <batchScript></batchScript>
+          </batchProperties>
+        </outboundProperties>
+      </responseTransformer>
+      <filter version="4.5.2">
+        <elements/>
+      </filter>
+      <transportName>Channel Writer</transportName>
+      <mode>DESTINATION</mode>
+      <enabled>true</enabled>
+      <waitForPrevious>true</waitForPrevious>
+    </connector>
+  </destinationConnectors>
+  <preprocessingScript>// Modify the message variable below to pre process data
+return message;</preprocessingScript>
+  <postprocessingScript>// This script executes once after a message has been processed
+// Responses returned from here will be stored as &quot;Postprocessor&quot; in the response map
+return;</postprocessingScript>
+  <deployScript>// This script executes once when the channel is deployed
+// You only have access to the globalMap and globalChannelMap here to persist data
+return;</deployScript>
+  <undeployScript>// This script executes once when the channel is undeployed
+// You only have access to the globalMap and globalChannelMap here to persist data
+return;</undeployScript>
+  <properties version="4.5.2">
+    <clearGlobalChannelMap>true</clearGlobalChannelMap>
+    <messageStorageMode>DEVELOPMENT</messageStorageMode>
+    <encryptData>false</encryptData>
+    <encryptAttachments>false</encryptAttachments>
+    <encryptCustomMetaData>false</encryptCustomMetaData>
+    <removeContentOnCompletion>false</removeContentOnCompletion>
+    <removeOnlyFilteredOnCompletion>false</removeOnlyFilteredOnCompletion>
+    <removeAttachmentsOnCompletion>false</removeAttachmentsOnCompletion>
+    <initialState>STARTED</initialState>
+    <storeAttachments>true</storeAttachments>
+    <metaDataColumns>
+      <metaDataColumn>
+        <name>SOURCE</name>
+        <type>STRING</type>
+        <mappingName>mirth_source</mappingName>
+      </metaDataColumn>
+      <metaDataColumn>
+        <name>TYPE</name>
+        <type>STRING</type>
+        <mappingName>mirth_type</mappingName>
+      </metaDataColumn>
+    </metaDataColumns>
+    <attachmentProperties version="4.5.2">
+      <type>None</type>
+      <properties/>
+    </attachmentProperties>
+    <resourceIds class="linked-hash-map">
+      <entry>
+        <string>Default Resource</string>
+        <string>[Default Resource]</string>
+      </entry>
+    </resourceIds>
+  </properties>
+  <exportData>
+    <metadata>
+      <enabled>true</enabled>
+      <lastModified>
+        <time>1775955953073</time>
+        <timezone>America/Chicago</timezone>
+      </lastModified>
+      <pruningSettings>
+        <archiveEnabled>true</archiveEnabled>
+        <pruneErroredMessages>false</pruneErroredMessages>
+      </pruningSettings>
+      <userId>1</userId>
+    </metadata>
+  </exportData>
+</channel>

ci/tests/120-filter-transformer/channels/01-source-filter/messages/01-accepted/dest01

@@ -0,0 +1 @@
+((ANY))KEEP this one((ANY))

ci/tests/120-filter-transformer/channels/01-source-filter/messages/01-accepted/dest01_status

@@ -0,0 +1 @@
+SENT

ci/tests/120-filter-transformer/channels/01-source-filter/messages/01-accepted/source

@@ -0,0 +1 @@
+KEEP this one

ci/tests/120-filter-transformer/channels/01-source-filter/messages/01-accepted/source_status

@@ -0,0 +1 @@
+TRANSFORMED

ci/tests/120-filter-transformer/channels/01-source-filter/messages/01-accepted/source_transformed

@@ -0,0 +1 @@
+KEEP this one

ci/tests/120-filter-transformer/channels/01-source-filter/messages/02-filtered/source

@@ -0,0 +1 @@
+REJECT this one

ci/tests/120-filter-transformer/channels/01-source-filter/messages/02-filtered/source_status

@@ -0,0 +1 @@
+FILTERED

ci/tests/120-filter-transformer/channels/01-source-filter/messages/02-filtered/source_transformed

@@ -0,0 +1 @@
+REJECT this one