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Bioconductor - #140

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nbartonicek wants to merge 16 commits into

mainfrom

Open

Bioconductor#140
nbartonicek wants to merge 16 commits into
mainfrom
bioconductor

Commits on Oct 19, 2025
- Fix plot_rle
  nbartonicek
  committed
  eabe493
- Fix normalisation and plot_rle
  nbartonicek
  committed
  2106dfe
Commits on Oct 25, 2025
- fix DESeq2 batch factor not in the design
  
  qoiopipq
  authored and
  nbartonicek
  committed
  4e04dc5
- add all revision vignettes
  
  qoiopipq
  authored and
  nbartonicek
  committed
  7ba5119
- add R/select_good_controls.R
  
  qoiopipq
  authored and
  nbartonicek
  committed
  99eefc3
- add
  
  qoiopipq
  authored and
  nbartonicek
  committed
  01a0894
- change select_good_controls.R to select_robust_controls.R
  
  qoiopipq
  authored and
  nbartonicek
  committed
  bfb2d15
- fix bug in R/check_zeroinflation.R
  
  qoiopipq
  authored and
  nbartonicek
  committed
  f1c30a2
- remove testing vignettes
  
  qoiopipq
  authored and
  nbartonicek
  committed
  3c6d6a1
- finish up select_robust_controls
  
  qoiopipq
  authored and
  nbartonicek
  committed
  4b845b2
- update vignettes/cross_platform_compatibility.Rmd
  
  qoiopipq
  authored and
  nbartonicek
  committed
  d1f0aa6
- fix non-ASCII in select_robust_controls.R
  
  qoiopipq
  authored and
  nbartonicek
  committed
  8d1c888
- Fix single_de Seurat
  nbartonicek
  committed
  e35a142
- Fix single_de Seurat
  nbartonicek
  committed
  11ef970
- Fix limma_zinb
  nbartonicek
  committed
  f03d5a0
- Fix limma trend method
  nbartonicek
  committed
  cacfdb2