Skip to content
@SushiLab

SushiLab

Pinned Loading

  1. mVIRs mVIRs Public

    Python 13 4

  2. mTAGs mTAGs Public

    Python 7 2

  3. kTYPr kTYPr Public

    A command-line tool for predicting K-antigen type classifications in Escherichia coli.

    Python 1 1

Repositories

Showing 10 of 19 repositories
  • ocean-subspecies-paper Public

    This repository contains the code associated with the manuscript "Genomically cohesive subspecies as eco-evolutionary units in the global ocean microbiome" by Paoli, Priest et al.

    SushiLab/ocean-subspecies-paper's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Sep 28, 2026
  • kTYPr Public

    A command-line tool for predicting K-antigen type classifications in Escherichia coli.

    SushiLab/kTYPr's past year of commit activity
    Python 1 GPL-3.0 1 1 0 Updated Sep 8, 2026
  • thal_alte_analysis Public
    SushiLab/thal_alte_analysis's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Sep 4, 2026
  • omdb-download Public
    SushiLab/omdb-download's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Aug 25, 2026
  • kTYPr_EcoEpidem Public

    Code and input files to reproduce the analyses in the manuscript "The natural diversity of E. coli capsules".

    SushiLab/kTYPr_EcoEpidem's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Apr 2, 2026
  • mTRAc_Manuscript Public
    SushiLab/mTRAc_Manuscript's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 31, 2025
  • reef-microbiomics-paper Public

    This repository contains the code associated with the reef microbiomics manuscript

    SushiLab/reef-microbiomics-paper's past year of commit activity
    R 4 GPL-3.0 0 0 0 Updated Dec 7, 2025
  • mTRAc Public

    MetaTRAnscriptomic growth Classifier

    SushiLab/mTRAc's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Nov 22, 2025
  • NATIONAL_FUTURE_DAY_TEA Public

    Contains scripts for the kids to run at national future day.

    SushiLab/NATIONAL_FUTURE_DAY_TEA's past year of commit activity
    0 GPL-3.0 0 0 0 Updated Nov 13, 2024
  • coralmicrobiome-hostbiodiversity Public
    SushiLab/coralmicrobiome-hostbiodiversity's past year of commit activity
    R 0 0 0 0 Updated Nov 13, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…