When kinc help run similarity is run, preout and postout default value to true (all lower case)
--preout <value>
Value Type: Boolean
Default Value: true
Whether to remove pre-clustering outliers.
--postout <value>
Value Type: Boolean
Default Value: true
Whether to remove post-clustering outliers.
In the example documentation, they are set to TRUE (all uppercase)
kinc run similarity \
--input "PRJNA301554.slim.GEM.log2.emx" \
--ccm "PRJNA301554.slim.GEM.log2.ccm" \
--cmx "PRJNA301554.slim.GEM.log2.cmx" \
--clusmethod "gmm" \
--corrmethod "spearman" \
--minexpr -inf \
--minsamp 25 \
--minclus 1 \
--maxclus 5 \
--crit "ICL" \
--preout TRUE \
--postout TRUE \
--mincorr 0 \
--maxcorr 1
In the c++ standard, true is a bool where as TRUE is not defined.
When
kinc help run similarityis run, preout and postout default value totrue(all lower case)In the example documentation, they are set to
TRUE(all uppercase)In the c++ standard,
trueis a bool where asTRUEis not defined.