Issues

• Measure and reduce peak memory across raw loading, libraries, and search results

  TalusBio/timsbuktoolkit#151 · Filter by author jspaezp opened on Sep 26, 2026

• Add runtime process memory monitoring to timsseek

  TalusBio/timsbuktoolkit#150 · Filter by author jspaezp opened on Sep 26, 2026

• [Bug?] Mass recalibration does not constrain mass error.

  TalusBio/timsbuktoolkit#143 · Filter by author jspaezp opened on Sep 12, 2026

• [Feat] User box input peptide search on viewer

  TalusBio/timsbuktoolkit#134 · Filter by author jspaezp opened on Sep 5, 2026

• --verbosity arg

  TalusBio/timsbuktoolkit#129 · Filter by author jspaezp opened on Sep 4, 2026

• More informative --version

  TalusBio/timsbuktoolkit#128 · Filter by author jspaezp opened on Sep 4, 2026

• Mobility windows: fit 1/K0 from (charge, m/z) in Phase 2, derive pass-2 width from within-peptide spread

  TalusBio/timsbuktoolkit#126 · Filter by author jspaezp opened on Sep 4, 2026

• calibration.json is a per-run artifact but is not in the artifacts.rs contract

  TalusBio/timsbuktoolkit#122 · Filter by author jspaezp opened on Sep 4, 2026

• Support FASTA input for calibration-library sequence matching

  TalusBio/timsbuktoolkit#119 · Filter by author jspaezp opened on Sep 2, 2026

• Finish arena ownership: pair intensities with geometry and filter decoys at seal

  TalusBio/timsbuktoolkit#118 · Filter by author jspaezp opened on Sep 2, 2026
  2

• Represent mobility observables explicitly and degrade searches safely

  TalusBio/timsbuktoolkit#117 · Filter by author jspaezp opened on Sep 2, 2026

• Remove the deprecated CLI spellings after 2026-12-31

  TalusBio/timsbuktoolkit#116 · Filter by author jspaezp opened on Sep 1, 2026

• Intern label strings: Target<String> is 416 bytes where a handle would be 120

  TalusBio/timsbuktoolkit#112 · Filter by author jspaezp opened on Aug 29, 2026

• Misplaced-modification warnings are invisible for the common numeric Unimod spelling

  TalusBio/timsbuktoolkit#109 · Filter by author jspaezp opened on Aug 28, 2026

• Follow-ups from #100: t/d competition structure, feature contract, and two adjacent key-drift bugs

  TalusBio/timsbuktoolkit#101 · Filter by author jspaezp opened on Aug 28, 2026

• Replace deprecated ParquetObjectReader with a hand-written AsyncFileReader

  TalusBio/timsbuktoolkit#86 · Filter by author jspaezp opened on Aug 6, 2026

• Viewer's calibration Apply writes a uniform RT tolerance where a real search uses a position-dependent one

  TalusBio/timsbuktoolkit#83 · Filter by author jspaezp opened on Jul 27, 2026

• [TODO] Fix warnings

  TalusBio/timsbuktoolkit#32 · Filter by author jspaezp opened on Jul 26, 2025