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@UKHD-NP

UKHD-NP

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  1. proteopy proteopy Public

    An AnnData-based framework for integrated proteomics analysis

    Python 30 3

  2. advanced-python_course advanced-python_course Public

    Advanced python course with the aim of teaching package development, reproducible coding practices, documentation, version control and collaborative working with git and Github.

    Jupyter Notebook 5

  3. Rapid-CNS2_sh Rapid-CNS2_sh Public

    Neuropathology Heidelberg Rapid-CNS2 pipeline (bash + docker)

    R 1 3

  4. rnaseq_snakemake rnaseq_snakemake Public

    Bulk RNA-seq Snakemake workflow: Compatible with local and LSF-based HPC systems

    HTML

  5. snRNA_spatial_labeltransfer snRNA_spatial_labeltransfer Public

    Jupyter Notebook

  6. proteosim proteosim Public

    Reference repository for the course "Proteomics and package development using python" WS25/26, Molecular Biotechnology

    Jupyter Notebook

Repositories

Showing 9 of 9 repositories
  • proteopy Public

    An AnnData-based framework for integrated proteomics analysis

    UKHD-NP/proteopy's past year of commit activity
    Python 30 Apache-2.0 3 14 5 Updated Sep 19, 2026
  • atacseq_snakemake_new Public

    Bulk ATAC-seq Snakemake workflow: Compatible with local and LSF-based HPC systems

    UKHD-NP/atacseq_snakemake_new's past year of commit activity
    Python 0 0 0 0 Updated Sep 6, 2026
  • rnaseq_snakemake Public

    Bulk RNA-seq Snakemake workflow: Compatible with local and LSF-based HPC systems

    UKHD-NP/rnaseq_snakemake's past year of commit activity
    HTML 0 0 0 0 Updated Sep 3, 2026
  • agent-skills Public

    A collection of skills for LLM agents (Claude Code and others).

    UKHD-NP/agent-skills's past year of commit activity
    Shell 0 0 0 0 Updated Aug 30, 2026
  • PromoterScan Public

    R package for promoter region extraction and annotation from GTF files.

    UKHD-NP/PromoterScan's past year of commit activity
    R 0 0 0 0 Updated May 31, 2026
  • proteosim Public

    Reference repository for the course "Proteomics and package development using python" WS25/26, Molecular Biotechnology

    UKHD-NP/proteosim's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 24, 2025
  • advanced-python_course Public

    Advanced python course with the aim of teaching package development, reproducible coding practices, documentation, version control and collaborative working with git and Github.

    UKHD-NP/advanced-python_course's past year of commit activity
    Jupyter Notebook 5 MIT 0 0 0 Updated Nov 24, 2025
  • snRNA_spatial_labeltransfer Public
    UKHD-NP/snRNA_spatial_labeltransfer's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 9, 2024
  • Rapid-CNS2_sh Public

    Neuropathology Heidelberg Rapid-CNS2 pipeline (bash + docker)

    UKHD-NP/Rapid-CNS2_sh's past year of commit activity
    R 1 3 0 0 Updated Apr 6, 2024

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Most used topics

epigenetics snakemake