Issues

• Issues running Spectronaut data from MSstatsPTM LabelFree Workflow Vignette

  Vitek-Lab/MSstatsPTM#132 · Filter by author joreynajr opened on Apr 28, 2026
  5

• Global proteome search

  Vitek-Lab/MSstatsPTM#123 · Filter by author DiegoFGR15 opened on Feb 6, 2026
  6

• How to use the code to analysis the data search from tair?

  Vitek-Lab/MSstatsPTM#122 · Filter by author manni227 opened on Jan 13, 2026
  3

• Extremely Slow Performance of dataSummarizationPTM Function (2+ Days for Summarization)

  Vitek-Lab/MSstatsPTM#113 · Filter by author dingdaxianxinnn opened on Apr 27, 2025
  1

• Compatability with DIA-NN 2.0

  Vitek-Lab/MSstatsPTM#109 · Filter by author kswovick opened on Mar 28, 2025
  10

• Add check for protein data in use_unmod_peptides

  bugenhancement
  Vitek-Lab/MSstatsPTM#104 · Filter by author devonjkohler opened on Jan 7, 2025
  

• Request for a Mascot Server/Distiller output table converter

  enhancement
  Vitek-Lab/MSstatsPTM#77 · Filter by author lostculture opened on Jan 23, 2024

• Converter for PaSER (DIA) matrix to MSstatsPTM ?

  enhancement
  Vitek-Lab/MSstatsPTM#65 · Filter by author JieXue22 opened on Aug 16, 2023
  1

• converter for MetaMorpheus output to MSstatsPTM

  enhancement
  Vitek-Lab/MSstatsPTM#48 · Filter by author ofleitas opened on Mar 29, 2023 · Beta Testing
  7

• Protein Prospector Converter

  enhancement
  Vitek-Lab/MSstatsPTM#39 · Filter by author jcmaynard opened on Nov 17, 2022 · Beta Testing
  13

• Add combination of LF and TMT for PTM/Protein input

  enhancement
  Vitek-Lab/MSstatsPTM#25 · Filter by author devonjkohler opened on Nov 8, 2021