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@ICB-DCM @emune-dev @bayesflow-org

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arrjon/README.md

Jonas Arruda

Postdoctoral Researcher at the University of Helsinki


🔬 Research Focus

I work at the interface of machine learning, probability, and biological modeling.
My current projects focus on:

  • Amortized simulation-based inference for mechanistic simulations
  • Scalable Bayesian inference for large hierarchical dynamical systems
  • Diffusion models, flow matching, consistency models, mean flows, etc., for interpretable scientific modeling
Research Proposal Overview

📄 Selected Publications


Check out my tutorial on diffusion models for SBI

Youtube Video

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  1. bayesflow-org/bayesflow bayesflow-org/bayesflow Public

    A Python library for simulation-based inference with deep learning

    Python 780 93

  2. bayesflow-org/diffusion-experiments bayesflow-org/diffusion-experiments Public

    Hosts the experimental results for our review on diffusion models in SBI

    HTML 13 4

  3. BayesFlowTutorial BayesFlowTutorial Public

    Lecture at ProbAI Summer School 2026

    Jupyter Notebook 3 1

  4. bayesflow-org/hierarchical-abi bayesflow-org/hierarchical-abi Public

    Compositional Amortized Inference for Large-Scale Hierarchical Bayesian Models

    Jupyter Notebook 1

  5. ICB-DCM/pyABC ICB-DCM/pyABC Public

    distributed, likelihood-free inference

    Python 221 46