All pull requests

Pull requests

• [r][cpp] Use threads and build results in place in pseudobulk_matrix()

  #349·koefoeden opened Oct 21, 2026Contributor·

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• [r] Compute marker_features() group means with pseudobulk_matrix()

  #348·koefoeden opened Oct 21, 2026Contributor·

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• [cpp] Speed up reading 10x and BED fragment files

  #347·koefoeden opened Oct 21, 2026Contributor·

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• [r][cpp] Fix crash reading NULLPAD/ASCII variable-length strings in anndata HDF5

  #343·JuanTejedor opened Jul 31, 2026·

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• [r] Support graph list inputs in clustering

  #337·koefoeden opened May 6, 2026Contributor·

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• Update docs for commit: [r] Fix knn_hnsw() input query rowname bug (#334)

  #335·github-actions[bot] opened Apr 9, 2026Bot·

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• Update docs for commit: [r][cpp] Support 64 bit matrices, as well as signed matrices for Anndata reading and writing (#330)

  #332·github-actions[bot] opened Dec 16, 2025Bot·

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• Update docs for commit: [python] bump pypa cibuildwheel to v3.2.0 (#308)

  #331·github-actions[bot] opened Dec 16, 2025Bot·

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• [cpp] add explicit hdf5 v1.12.0 dependency

  #329·immanuelazn opened Dec 12, 2025Collaborator·

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• Update docs for commit: [r] fix issue for qc_scATAC() near chromosome starts

  #321·github-actions[bot] opened Nov 11, 2025Bot·

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• Update docs for commit: [r] fix issue in documentation examples in plot_embedding() (#316)

  #318·github-actions[bot] opened Nov 11, 2025Bot·

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• test

  #317·immanuelazn opened Nov 10, 2025Collaborator·

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• [r] Prepare package for CRAN

  #311·immanuelazn opened Oct 21, 2025Collaborator·

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• [r][cpp] Add sparse = TRUE as an option for pseudobulk_matrix()

  #268·ycli1995 opened Jun 14, 2025Contributor·

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• [r][cpp] Add dense cross-product and related ops

  #243·bnprks opened Apr 17, 2025Owner·

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• [r] clean up svds docs

  #206·immanuelazn opened Mar 8, 2025Collaborator·

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• Normalizations, Feature Selections, DimReduction S3 class, (Iterative) Lsi Implementation, Partial function framework, Clustering changes and Framework

  #189·immanuelazn opened Jan 27, 2025Collaborator·

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  35

• [r] add iterative lsi design docs

  #167·immanuelazn opened Dec 12, 2024Collaborator·

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• [cpp] update hwy to v1.2.0

  #163·immanuelazn opened Nov 25, 2024Collaborator·

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  1