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chore(deps): bump the python-dependencies group across 1 directory with 10 updates - #387

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chore(deps): bump the python-dependencies group across 1 directory with 10 updates#387
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Bumps the python-dependencies group with 10 updates in the / directory:

Package From To
numcodecs 0.16.5 0.17.0
google-crc32c 1.8.0 1.9.0
fsspec 2026.7.0 2026.9.0
hypothesis 6.168.0 6.168.1
uv 0.12.15 0.12.19
botocore 1.43.0 1.43.103
s3fs 2026.7.0 2026.9.0
mkdocstrings-python 2.0.8 2.0.9
ruff 0.16.8 0.16.9
astroid 4.3.1 4.3.2

Updates numcodecs from 0.16.5 to 0.17.0

Release notes

Sourced from numcodecs's releases.

v0.17.0

What's Changed

New Contributors

Full Changelog: zarr-developers/numcodecs@v0.16.5...v0.17.0

Changelog

Sourced from numcodecs's changelog.

0.17.0

Breaking changes

  • The minimum supported Python version is now 3.12, and the minimum supported NumPy version is now 2.0, following SPEC-0. By {user}Max Jones <maxrjones>, {issue}834

  • Tests are no longer installed as part of the numcodecs package. They have moved from numcodecs/tests/ to a top-level tests/ directory, so numcodecs.tests (including numcodecs.tests.common) can no longer be imported from an installed copy of numcodecs. Downstream packages that reused the test helpers should vendor the helpers they need. The tests and the fixture/ data are still shipped in the source distribution, so downstream packagers can continue to run the suite from an unpacked sdist. By {user}Max Jones <maxrjones>, {issue}829

  • The DISABLE_NUMCODECS_CEXT environment variable is no longer supported, as a consequence of the migration to meson-python (see Maintenance below). By {user}Max Jones <maxrjones>, {issue}826

  • The pcodec optional dependency now requires pcodec>=1,<2, up from pcodec>=0.3,<0.4. By {user}Martin Loncaric <mwlon>, {issue}817

  • Two behavioral changes in numcodecs.blosc accompany the free-threading work (see Enhancements below): the undocumented numcodecs.blosc.get_mutex function is removed, replaced by a private threading.Lock that also guards set_nthreads, _init, _destroy and the global-context decompression path; and on platforms where multiprocessing.Lock() raises (no sem_open), Blosc's internal threads are now used from the main thread instead of always falling back to the single-threaded context functions. By {user}Kumar Aditya <kumaraditya303>, {issue}858

Deprecations

  • PCodec(delta_spec="none") is deprecated in favor of PCodec(delta_spec="no_op") and now emits a DeprecationWarning. The "none" spelling still works and produces identical output, but it will be removed in a future version. By {user}Martin Loncaric <mwlon>, {issue}817

Enhancements

  • Add support for free-threaded CPython (3.14t). All Cython extensions are declared freethreading_compatible, so importing numcodecs no longer re-enables the GIL; free-threaded wheels are now built and 3.14t is part of the test matrix. Building from source now requires Cython 3.1 or newer. See Breaking changes above for the accompanying numcodecs.blosc changes. By {user}Kumar Aditya <kumaraditya303>, {issue}858

... (truncated)

Commits
  • fcc79a1 docs: add release notes for 0.17.0 (#859)
  • 9d93931 CI: set an explicit python-version for test-crc32c and test-zarr (#856)
  • eff52c8 Add free-threaded CPython (3.14t) support (#858)
  • 82c3635 Bump GitHub actions (#838)
  • e813354 Add pytest-cov to dev dependency group (#846)
  • f3d6187 update pcodec (#817)
  • 53e5157 Skip test_pyzstd when pyzstd cannot be imported (#845)
  • 99566f0 chore: pin pytest and dedupe dependency groups (#844)
  • 2a0b67f zarr-python does not depend on crc32c anymore (#840)
  • fa92ee7 CI: Fix Meson mixup between Conda and system Python headers (#839)
  • Additional commits viewable in compare view

Updates google-crc32c from 1.8.0 to 1.9.0

Changelog

Sourced from google-crc32c's changelog.

Changelog

PyPI History

Commits

Updates fsspec from 2026.7.0 to 2026.9.0

Commits
  • 0f76baa changelog (#2166)
  • 695f831 Add age-based cleanup for simplecache (#2118)
  • 42aa468 Mirror readinto from the pyarrow stream onto ArrowFile (#2111)
  • 4a4e6ae Make the SFTP host key policy configurable (#2126)
  • a0ce6db Normalize paths in AsyncFileSystemWrapper like the wrapped filesystem (#2159)
  • c5fea6d Fix cat_ranges on whole-file caches after #2154 (#2163)
  • 9efb18b Patch HAS_CPYTHON_API where _fast_slice reads it (#2164)
  • 27bcd35 feat(AdaptiveReadaheadCache): introducing a new cache-type adaptive (#2093)
  • a681aca Ignore a leading slash in TarFileSystem paths (#2148)
  • 57c55f8 Make names relative in DirFileSystem.walk(detail=True) (#2160)
  • Additional commits viewable in compare view

Updates hypothesis from 6.168.0 to 6.168.1

Commits
  • 6cee8ce Bump hypothesis version to 6.168.1 and update changelog
  • d97fdf3 Merge pull request #4879 from Liam-DeVoe/more-wheels
  • 37da03c publish wheels for s390x and i686+musl
  • See full diff in compare view

Updates uv from 0.12.15 to 0.12.19

Release notes

Sourced from uv's releases.

0.12.19

Release Notes

Released on 2026-09-24.

Python

  • Add PyPy 3.11.16 and 3.12.14 (#21847)
  • Update GraalPy 3.13.0 to build 25.4.4 (#21847)

Enhancements

  • Format upload URLs with backticks in uv publish errors (#21934)

Preview features

  • Run build-backend hooks with lazy imports on CPython 3.15 and later using the build-lazy-imports preview feature (#21967)
  • Omit unused resolution settings from uv.lock and ignore changes to them when checking lockfile freshness with the resolution-inputs preview feature (#21913)

Bug fixes

  • Preserve signed and encoded query parameters in direct-URL metadata to avoid reinstalling unchanged packages (#21971)
  • Recognize 1.0.0 as satisfying ===1 during installed-package checks, matching resolution (#21931)
  • Avoid collisions between Git checkout readiness markers and .ok files in dependencies (#21891)
  • Preserve always-false python_version markers when parsing their serialized form (#21939)

Rust API

  • Restore the public FlatDistributions export and its BTreeMap conversion for downstream resolvers (#21965)

Documentation

  • Make individual preview-feature reference entries linkable by name (#21950)

Install uv 0.12.19

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://releases.astral.sh/github/uv/releases/download/0.12.19/uv-installer.sh | sh

Install prebuilt binaries via powershell script

powershell -ExecutionPolicy Bypass -c "irm https://releases.astral.sh/github/uv/releases/download/0.12.19/uv-installer.ps1 | iex"

Download uv 0.12.19

... (truncated)

Changelog

Sourced from uv's changelog.

0.12.19

Released on 2026-09-24.

Python

  • Add PyPy 3.11.16 and 3.12.14 (#21847)
  • Update GraalPy 3.13.0 to build 25.4.4 (#21847)

Enhancements

  • Format upload URLs with backticks in uv publish errors (#21934)

Preview features

  • Run build-backend hooks with lazy imports on CPython 3.15 and later using the build-lazy-imports preview feature (#21967)
  • Omit unused resolution settings from uv.lock and ignore changes to them when checking lockfile freshness with the resolution-inputs preview feature (#21913)

Bug fixes

  • Preserve signed and encoded query parameters in direct-URL metadata to avoid reinstalling unchanged packages (#21971)
  • Recognize 1.0.0 as satisfying ===1 during installed-package checks, matching resolution (#21931)
  • Avoid collisions between Git checkout readiness markers and .ok files in dependencies (#21891)
  • Preserve always-false python_version markers when parsing their serialized form (#21939)

Rust API

  • Restore the public FlatDistributions export and its BTreeMap conversion for downstream resolvers (#21965)

Documentation

  • Make individual preview-feature reference entries linkable by name (#21950)

0.12.18

Released on 2026-09-22.

This release addresses GHSA-2cv4-cqwr-gwf7, which is a path traversal weakness during wheel installation on Windows. No other platforms are affected by this advisory.

Enhancements

  • Add --output-format json to uv pip install and uv pip sync, including for --dry-run and --check (#21893)
  • Add --check to uv pip install and uv pip sync to report planned changes without modifying the environment (#21844)
  • Identify failures from get_requires_for_build_* hooks correctly in build errors (#21881)

Preview features

  • Validate build requirements for uv build --no-build-isolation with --preview-features build-dependency-check; use --skip-dependency-check to opt out (#21880)

Performance

... (truncated)

Commits

Updates botocore from 1.43.0 to 1.43.103

Commits

Updates s3fs from 2026.7.0 to 2026.9.0

Commits
  • 62f45e6 changelog (#1044)
  • 85a6ec5 Retry transient errors on each listing page (#1042)
  • 359cf57 Preserve coroutine errors without a response local (#1041)
  • 6d5b34b version-guard and strict the big exclusive-write xfails, stale since moto 5.1...
  • d3dd9b7 Fix requester pays propogation and bug with combining head_bucket and `req...
  • See full diff in compare view

Updates mkdocstrings-python from 2.0.8 to 2.0.9

Release notes

Sourced from mkdocstrings-python's releases.

2.0.9

2.0.9 - 2026-09-22

Compare with 2.0.8

Bug Fixes

  • Improve inventory object types (incorrectly called roles in mkdocstrings) (d754326 by Timothée Mazzucotelli). Issue-339, PR-340
  • Expand relative cross-references against the object the docstring was written on (a9a4ca3 by Dev M). Issue-341, PR-342

Performance Improvements

  • Small performance improvement when getting aliases and formatting/highlighting signatures (2263163 by Timothée Mazzucotelli).
Changelog

Sourced from mkdocstrings-python's changelog.

2.0.9 - 2026-09-22

Compare with 2.0.8

Bug Fixes

  • Improve inventory object types (incorrectly called roles in mkdocstrings) (d754326 by Timothée Mazzucotelli). Issue-339, PR-340
  • Expand relative cross-references against the object the docstring was written on (a9a4ca3 by Dev M). Issue-341, PR-342

Performance Improvements

  • Small performance improvement when getting aliases and formatting/highlighting signatures (2263163 by Timothée Mazzucotelli).
Commits
  • c888dc2 chore: Prepare release 2.0.9
  • 2263163 perf: Small performance improvement when getting aliases and formatting/highl...
  • d754326 fix: Improve inventory object types (incorrectly called roles in mkdocstrings)
  • a9a4ca3 fix: Expand relative cross-references against the object the docstring was wr...
  • See full diff in compare view

Updates ruff from 0.16.8 to 0.16.9

Release notes

Sourced from ruff's releases.

0.16.9

Release Notes

Released on 2026-09-24.

Preview features

  • [ruff] Avoid false positives for overloaded division (RUF069) (#28309)

Bug fixes

  • [flake8-bugbear] Avoid false positives for calls with keyword arguments (B009, B010, B043) (#28776)
  • [flake8-tidy-imports] Allow lazy imports to be used in deferred annotations (TID255) (#28767)

Rule changes

  • Update LibCST-based fixes for Python 3.15 (#28616)
  • [flake8-pyi] Mention stubs in the diagnostic message (PYI002) (#28542)

Documentation

  • Fix horizontal overflow on the rules documentation page (#28699)
  • Update rules table with category information (#28651)
  • [flake8-annotations] Clarify that ANN401 checks return types in addition to arguments (#28334)
  • [flake8-bugbear] Document type-checker interaction (B010) (#28509)
  • [flake8-comprehensions] Document map/generator exception behavior (C417) (#27794)
  • [ruff] Mention related isort settings (RUF022) (#28719)

Contributors

Install ruff 0.16.9

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://releases.astral.sh/github/ruff/releases/download/0.16.9/ruff-installer.sh | sh

... (truncated)

Changelog

Sourced from ruff's changelog.

0.16.9

Released on 2026-09-24.

Preview features

  • [ruff] Avoid false positives for overloaded division (RUF069) (#28309)

Bug fixes

  • [flake8-bugbear] Avoid false positives for calls with keyword arguments (B009, B010, B043) (#28776)
  • [flake8-tidy-imports] Allow lazy imports to be used in deferred annotations (TID255) (#28767)

Rule changes

  • Update LibCST-based fixes for Python 3.15 (#28616)
  • [flake8-pyi] Mention stubs in the diagnostic message (PYI002) (#28542)

Documentation

  • Fix horizontal overflow on the rules documentation page (#28699)
  • Update rules table with category information (#28651)
  • [flake8-annotations] Clarify that ANN401 checks return types in addition to arguments (#28334)
  • [flake8-bugbear] Document type-checker interaction (B010) (#28509)
  • [flake8-comprehensions] Document map/generator exception behavior (C417) (#27794)
  • [ruff] Mention related isort settings (RUF022) (#28719)

Contributors

Commits
  • 0be08a2 Bump version to 0.16.9 (#28882)
  • b4920b7 Rename ruff_cli to ruff_command_line (#28881)
  • 47c751b Update dependency astral-sh/uv to v0.12.18 (#28880)
  • 8c244e5 [flake8-comprehensions] Document map/generator exception behavior (C417...
  • 5edf5a1 Use target form in rooster.version_files (#28876)
  • 915bb2b [ty] Prefer existing @ paths over response files in Ruff and ty (#28877)
  • 4710e1a ci(github): update version number in placeholder of issue template (#28871)
  • eedfc62 [ty] Propagate outer type context through cast calls (#28855)
  • ceaa6a0 [ty] Contain rendered code within Markdown fences (#28869)
  • dba0f30 authorize ruff-pre-commit dispatch via OIDC (#28867)
  • Additional commits viewable in compare view

Updates astroid from 4.3.1 to 4.3.2

Release notes

Sourced from astroid's releases.

v4.3.2

What's new in astroid 4.3.2?

Release date: 2026-09-25

Bug Fixes

  • Fix a crash when a namedtuple or Enum type name or field name contains str.format markup, as in namedtuple("{0}", "abc"). The name is interpolated into an error message that astroid then reformats, so building the message raised IndexError. Inference now falls back to its default.

    Closes #3199

  • Infer a functional TypeVar or NewType whose name is not an identifier without splicing that name into the synthesized class source. A crafted value such as TypeVar("T(Base): #") no longer breaks out of the identifier position to inject bases or a body; the name is assigned to the class verbatim.

    Refs #3217

  • Raise InferenceError instead of crashing with IndexError when a class uses six.with_metaclass() with no positional metaclass argument, both while building the module and when the call is inferred.

    Refs #3248

  • ClassDef.slots() no longer crashes on a class that declares a PEP 695 type parameter literally named __slots__ (e.g. class C[__slots__]:). The type parameter's TypeVar node was mistaken for the class's actual __slots__ value; slots() now returns None for such classes instead of raising AttributeError.

    Refs #3258

  • Fix a crash when inferring an f-string or str.format() call whose c format spec gets an out-of-range code point, such as f"{-1:c}". These now infer to Uninferable, like the %c case fixed in #3254.

    Closes #3301

  • The args attribute of an exception instance is now inferred as a tuple instance of unknown contents instead of a known empty tuple, so unpacking exc.args no longer looks unbalanced.

    Closes pylint-dev/pylint#11312

Commits
  • e6e7908 Bump astroid to 4.3.2, update changelog
  • 69e47dd Point towncrier at the 4.3 what's new page on the maintenance branch
  • 164f1ef Add a CI check for missing news fragments
  • ee28385 Move the what's new documentation to a towncrier tree
  • b9d1b59 Add towncrier configuration and scripts
  • 8d33a23 [Backport maintenance/4.3.x] Catch OverflowError when inferring "c" format sp...
  • 4b0d26a [Backport maintenance/4.3.x] Infer the args of an exception instance as a t...
  • a84f015 [Backport maintenance/4.3.x] Fix AttributeError when PEP 695 type parameter i...
  • 27ddc86 [Backport maintenance/4.3.x] guard empty six.with_metaclass() call against In...
  • 42f2cca [Backport maintenance/4.3.x] Do not crash when an error message contains form...
  • Additional commits viewable in compare view

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@dependabot
chore(deps): bump the python-dependencies group across 1 directory wi…
1fd1f19 
…th 10 updates

Bumps the python-dependencies group with 10 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [numcodecs](https://github.com/zarr-developers/numcodecs) | `0.16.5` | `0.17.0` |
| [google-crc32c](https://github.com/googleapis/python-crc32c) | `1.8.0` | `1.9.0` |
| [fsspec](https://github.com/fsspec/filesystem_spec) | `2026.7.0` | `2026.9.0` |
| [hypothesis](https://github.com/HypothesisWorks/hypothesis) | `6.168.0` | `6.168.1` |
| [uv](https://github.com/astral-sh/uv) | `0.12.15` | `0.12.19` |
| [botocore](https://github.com/boto/botocore) | `1.43.0` | `1.43.103` |
| [s3fs](https://github.com/fsspec/s3fs) | `2026.7.0` | `2026.9.0` |
| [mkdocstrings-python](https://github.com/mkdocstrings/python) | `2.0.8` | `2.0.9` |
| [ruff](https://github.com/astral-sh/ruff) | `0.16.8` | `0.16.9` |
| [astroid](https://github.com/pylint-dev/astroid) | `4.3.1` | `4.3.2` |



Updates `numcodecs` from 0.16.5 to 0.17.0
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.md)
- [Commits](zarr-developers/numcodecs@v0.16.5...v0.17.0)

Updates `google-crc32c` from 1.8.0 to 1.9.0
- [Release notes](https://github.com/googleapis/python-crc32c/releases)
- [Changelog](https://github.com/googleapis/python-crc32c/blob/main/CHANGELOG.md)
- [Commits](https://github.com/googleapis/python-crc32c/commits)

Updates `fsspec` from 2026.7.0 to 2026.9.0
- [Commits](fsspec/filesystem_spec@2026.7.0...2026.9.0)

Updates `hypothesis` from 6.168.0 to 6.168.1
- [Release notes](https://github.com/HypothesisWorks/hypothesis/releases)
- [Commits](HypothesisWorks/hypothesis@v6.168.0...v6.168.1)

Updates `uv` from 0.12.15 to 0.12.19
- [Release notes](https://github.com/astral-sh/uv/releases)
- [Changelog](https://github.com/astral-sh/uv/blob/main/CHANGELOG.md)
- [Commits](astral-sh/uv@0.12.15...0.12.19)

Updates `botocore` from 1.43.0 to 1.43.103
- [Commits](boto/botocore@1.43.0...1.43.103)

Updates `s3fs` from 2026.7.0 to 2026.9.0
- [Changelog](https://github.com/fsspec/s3fs/blob/main/release-procedure.md)
- [Commits](fsspec/s3fs@2026.7.0...2026.9.0)

Updates `mkdocstrings-python` from 2.0.8 to 2.0.9
- [Release notes](https://github.com/mkdocstrings/python/releases)
- [Changelog](https://github.com/mkdocstrings/python/blob/main/CHANGELOG.md)
- [Commits](mkdocstrings/python@2.0.8...2.0.9)

Updates `ruff` from 0.16.8 to 0.16.9
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.16.8...0.16.9)

Updates `astroid` from 4.3.1 to 4.3.2
- [Release notes](https://github.com/pylint-dev/astroid/releases)
- [Changelog](https://github.com/pylint-dev/astroid/blob/main/ChangeLog)
- [Commits](pylint-dev/astroid@v4.3.1...v4.3.2)

---
updated-dependencies:
- dependency-name: numcodecs
  dependency-version: 0.17.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
- dependency-name: google-crc32c
  dependency-version: 1.9.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
- dependency-name: fsspec
  dependency-version: 2026.9.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
- dependency-name: hypothesis
  dependency-version: 6.168.1
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: uv
  dependency-version: 0.12.19
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: botocore
  dependency-version: 1.43.103
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: s3fs
  dependency-version: 2026.9.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
- dependency-name: mkdocstrings-python
  dependency-version: 2.0.9
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: ruff
  dependency-version: 0.16.9
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: astroid
  dependency-version: 4.3.2
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
...

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@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Oct 2, 2026
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dependabot Bot commented on behalf of github Oct 3, 2026

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Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot Bot closed this Oct 3, 2026
@dependabot
dependabot Bot deleted the dependabot/uv/python-dependencies-e08970e1d5 branch October 3, 2026 16:31
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