Hi and thank you for the great tool. I am trying to perform DEG analysis with DESeq2 and need raw counts. After using kallisto quant my output looks like this: <img width="713" alt="Screenshot 1403-03-19 at 22 59 07" src="https://github.com/griffithlab/rnaseq_tutorial/assets/76204791/530ee4a5-2e8a-4bee-96ed-a145ebb6d7d9"> Since the estimated count is calculated by MLE I was wondering how would you recommend using that for DESeq2. Thank you for your attention.
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Yenaled commentedon Jun 9, 2024
Cross-posted: https://www.biostars.org/p/9596637/
^And answer provided there