Skip to content
@labsyspharm

Laboratory of Systems Pharmacology @ Harvard

Reinventing the fundamental science underlying the development of new medicines and their use in individual patients.

Popular repositories Loading

  1. ashlar ashlar Public

    ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    Python 181 57

  2. mcmicro mcmicro Public

    Multiple-choice microscopy pipeline

    Nextflow 156 64

  3. scimap scimap Public

    Spatial Single-Cell Analysis Toolkit

    Python 116 38

  4. palom palom Public

    Piecewise alignment for layers of mosaics

    Python 65 12

  5. minerva-story minerva-story Public

    Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

    HTML 58 14

  6. cylinter cylinter Public

    An Interactive Image Segmentation Filter for Multiplex Microscopy

    Python 36 15

Repositories

Showing 10 of 187 repositories
  • Chen-Santagata-Kidney-2026 Public
    labsyspharm/Chen-Santagata-Kidney-2026's past year of commit activity
    MATLAB 0 MIT 2 0 0 Updated Sep 29, 2026
  • minerva-core-ui Public

    A microscopy viewer for non-experts

    labsyspharm/minerva-core-ui's past year of commit activity
    TypeScript 1 MIT 4 13 5 Updated Sep 28, 2026
  • scimap Public

    Spatial Single-Cell Analysis Toolkit

    labsyspharm/scimap's past year of commit activity
    Python 116 MIT 38 47 6 Updated Sep 28, 2026
  • mccellpose Public

    Alternative interface to the Cellpose cell segmentation algorithm that uses constant memory

    labsyspharm/mccellpose's past year of commit activity
    Python 0 BSD-3-Clause 2 2 0 Updated Sep 24, 2026
  • okl-analysis Public
    labsyspharm/okl-analysis's past year of commit activity
    Python 0 1 0 0 Updated Sep 23, 2026
  • minerva-author Public

    Tool to create images and configuration files for Minerva-Story

    labsyspharm/minerva-author's past year of commit activity
    Python 16 MIT 16 29 1 Updated Sep 23, 2026
  • visinity Public
    labsyspharm/visinity's past year of commit activity
    JavaScript 17 MIT 5 8 0 Updated Sep 22, 2026
  • minerva-public-website Public

    Public Website for information on Minerva software suite

    labsyspharm/minerva-public-website's past year of commit activity
    0 CC0-1.0 0 1 0 Updated Sep 21, 2026
  • ome-tiff-pyramid-tools Public

    Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.

    labsyspharm/ome-tiff-pyramid-tools's past year of commit activity
    Python 18 MIT 8 0 1 Updated Sep 17, 2026
  • ad-rna-editing Public
    labsyspharm/ad-rna-editing's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Sep 14, 2026
View all repositories

Top languages

Loading…

Most used topics

Loading…