Issues

• Installation fails in macOS

  liyu95/DeepSimulator#59 · Filter by author mikeph52 opened on Mar 4, 2026
  1

• Where is DTW performed during training? What is the Signal_To_Event binary doing? Still maintained?

  liyu95/DeepSimulator#58 · Filter by author maximilianmordig opened on Nov 7, 2023

• -nan of 0 (pass 0 + fail 0) reads passed base-calling

  liyu95/DeepSimulator#57 · Filter by author liushuqing506 opened on Aug 15, 2023

• Questions about the usage of this tool

  liyu95/DeepSimulator#56 · Filter by author HLHsieh opened on May 1, 2023

• Events at the output Fast5

  liyu95/DeepSimulator#55 · Filter by author parsboy66 opened on Feb 17, 2023

• length of the reads

  liyu95/DeepSimulator#54 · Filter by author parsboy66 opened on Feb 9, 2023

• Is this model still being developed?

  liyu95/DeepSimulator#53 · Filter by author raadcostellomahmoud opened on Jan 6, 2023

• double number of reads given by -n read_num

  liyu95/DeepSimulator#52 · Filter by author Psy-Fer opened on Sep 13, 2022

• Issue with small reference contigs

  liyu95/DeepSimulator#51 · Filter by author Csam488 opened on Aug 7, 2022

• Related to tuning of Repeat time

  liyu95/DeepSimulator#50 · Filter by author subhasiny opened on Jul 12, 2021
  5

• Signal generator 1.5 trained using R9 or R10 flowcell chemistry?

  liyu95/DeepSimulator#49 · Filter by author Linkrw12 opened on Jun 4, 2021
  3

• mapping from alignment paf file or pass/fail.fastq to the sampled_read_processed_genome_*.fasta

  liyu95/DeepSimulator#48 · Filter by author YantingHuang opened on Apr 29, 2021
  1

• Support for simulating more recent base-callers Guppy 3.6

  liyu95/DeepSimulator#45 · Filter by author cjain7 opened on Aug 17, 2020
  2

• Error in pore_model.sh

  liyu95/DeepSimulator#44 · Filter by author Jenny-dan opened on Jul 27, 2020
  1

• TensorFlow

  liyu95/DeepSimulator#43 · Filter by author solomonchak opened on Jul 15, 2020
  2

• dRNA with or without modifications?

  liyu95/DeepSimulator#40 · Filter by author pabloacera opened on Jun 13, 2020
  1

• multi fasta input

  liyu95/DeepSimulator#39 · Filter by author alstonius opened on May 18, 2020
  2

• Please include a notice to not have a conda env active during install

  liyu95/DeepSimulator#38 · Filter by author patbohn opened on Apr 25, 2020

• some questions about the model graph code

  liyu95/DeepSimulator#27 · Filter by author huangnengCSU opened on Jul 3, 2019

• [suggestion] update for latest conda/python

  enhancement
  liyu95/DeepSimulator#24 · Filter by author zdk123 opened on Jun 27, 2019
  7

• steps for training

  liyu95/DeepSimulator#18 · Filter by author brianwalenz opened on May 8, 2019
  2