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National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 51 14

  2. docs docs Public

    User-facing, web-based documentation about the NMDC

    Dockerfile 3 5

Repositories

Showing 10 of 85 repositories
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    microbiomedata/nmdc-schema's past year of commit activity
    Python 51 CC0-1.0 14 449 (5 issues need help) 18 Updated Sep 30, 2026
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    microbiomedata/nmdc-runtime's past year of commit activity
    Python 7 8 147 (3 issues need help) 13 Updated Sep 30, 2026
  • nmdc_automation Public

    Prototype automation

    microbiomedata/nmdc_automation's past year of commit activity
    Python 2 4 56 3 Updated Sep 30, 2026
  • external-metadata-awareness Public

    MongoDB + Parquet analytics for NCBI BioSample/BioProject/SRA and NMDC submission-portal metadata. Environmental triad annotation, harmonized-attribute counts, measurement discovery, value-set voting sheets.

    microbiomedata/external-metadata-awareness's past year of commit activity
    Jupyter Notebook 2 1 97 6 Updated Sep 30, 2026
  • nmdc-lakehouse Public
    microbiomedata/nmdc-lakehouse's past year of commit activity
    Python 0 MIT 1 68 1 Updated Sep 30, 2026
  • nmdc-mass-spec-automation Public

    NMDC data processing system for metabolomics, lipidomics, and NOM data. Workflow and metadata manager.

    microbiomedata/nmdc-mass-spec-automation's past year of commit activity
    Python 1 1 2 0 Updated Sep 30, 2026
  • nmdc_mass_spectrometry_metadata_generation Public

    Mass spectrometry metadata generation

    microbiomedata/nmdc_mass_spectrometry_metadata_generation's past year of commit activity
    Python 2 1 4 0 Updated Sep 29, 2026
  • nmdc-client Public

    A python client for interacting with the NMDC (National Microbiome Data Collaborative) runtime API.

    microbiomedata/nmdc-client's past year of commit activity
    Python 12 2 2 1 Updated Sep 29, 2026
  • nmdc-ai-eval Public

    Framework and data for performing evaluations for AI-powered NMDC tools.

    microbiomedata/nmdc-ai-eval's past year of commit activity
    Python 2 0 40 4 Updated Sep 29, 2026
  • nmdc-metadata-suggestor-ai-tool Public

    A repository to that holds the code for the NMDC Submission portal metadata suggestor tool, powered by AI

    microbiomedata/nmdc-metadata-suggestor-ai-tool's past year of commit activity
    Python 2 2 32 6 Updated Sep 29, 2026
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