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Every Git call ignores an inherited repository location - #478

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moq-bot[bot] merged 5 commits into
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quest/m1/git-env
Nov 4, 2026
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moq-bot[bot] merged 5 commits into
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quest/m1/git-env

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@kixelated

@kixelated kixelated commented Nov 4, 2026 •

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Finishes quest/m1/git-env.md.

Problem

When quest runs from a Git hook or git submodule foreach, it inherits GIT_DIR, GIT_WORK_TREE, GIT_INDEX_FILE and the rest of git rev-parse --local-env-vars. Those override discovery from git -C <path>, so a Git call on another path reads the hook's repository instead. moq-dev/quest#445 fixed this only for the worktree hook. Everything else still passed the environment through. For example, quest check from a superproject's pre-commit hook read a submodule's pins from the superproject and reported links that resolve as broken.

Change

  • New src/cli/git.ts holds discoveryEnv(env?), moved from worktree.ts, and one git(root, args, input?) helper. The helper drops the location variables, keeps -c config, never prompts, strips trailing newlines from the output, treats an unset config key as empty, and throws a GitError that carries status, stdout and stderr.
  • That helper replaces the near-duplicate helpers: gitOutput (claims.ts, also used by review.ts, setup.ts, start.ts), and git in worktree.ts, worktree-hook.ts, move.ts and github.ts. It also replaces the one-off calls in start.ts push, agent.ts spawnDirectory, move.ts mentions and worktree.ts ignored.
  • Helpers whose shape differs keep their own spawn and gain env: discoveryEnv(): tree.ts (Buffer output, --git-dir), landed.ts (status-based), worktree.ts gitAsync, land-apply.ts userGit, and land-fix.ts's branch lookup.
  • quest worktree run (Worktrees.run) drops the variables from the user's command, keeping -c config, as decided on moq-dev/quest#455. quest agent's spawned agent gets the same treatment, since it also works in its own checkout. README and --help say so.
  • Deletes the finished quest.

Public API and wire impact: none. quest worktree run behavior changes as described above.

Choices made without asking

  • Folded the helpers into one that strips only trailing newlines, like shell $(...), rather than trim(). Old gitOutput callers lose nothing they relied on, and leading whitespace in show output and -z paths is now kept.
  • Error messages from the folded helpers are now uniformly git <command> failed: <stderr>. Before, move.ts printed bare stderr and worktree.ts printed Node's Command failed: ....
  • Left as-is on purpose: src/runner/ (not started by Git, per the plan); land.ts tryGit/bytes (they already build the environment from scratch); resolve.ts, the merge driver, which runs in the repository being merged, so its inherited location is the right one; quest gate, which runs its command in place.
  • Extended the fix to land-apply.ts userGit, land-fix.ts and quest agent's agent environment. The quest's list did not name them, but the Goal covers every Git call on an explicit path.
  • Under a pre-commit hook, quest check now reads submodule pins from the checkout's own index, not from a git commit -a temporary index. That matches the work tree quest check reads its quests from.

Validation

  • just check passes.
  • just test passes (1044 passed and 5 skipped in the main suite, 531 in the Worker suite).
  • New tests, each confirmed to fail with the variable stripping disabled:
    • test/snapshot.test.ts: quest check with links into a deinitialized submodule nested in a checked-out one, under an inherited GIT_DIR, GIT_WORK_TREE and GIT_INDEX_FILE.
    • test/worktree.run.test.ts: quest worktree run with a main-checkout hook's variables and GIT_CONFIG_PARAMETERS. The command sees the reserved checkout's toplevel and still gets the -c value.

Review

mechanical fix by codex / Codex: Merged base and re·solved review.ts conflict, preserving async fetch and Git environment isolation; bun run build, bun run check, and bun run test passed (1056 tests passed, 5 skipped). (head 42a2919)

mechanical fix by codex / Codex: Merged base and re·solved worktree conflicts preserving both sides' intent; bun run build, bun run check, and bun run test passed (1044 tests, 5 skipped). (head 5c71e6a)

Round 1: Codex gpt-6.1-sol, effort xhigh, via quest review --base origin/main on head 915b521315c4e760dcc4b06d746f91669262243e (base 58696bc0). No findings.

Suggested follow-ups

None.

(Written by Claude Opus 5.5)

kixelated and others added 3 commits November 3, 2026 22:58
Quest-Claim: 27ba81576c70c2b5
Move discoveryEnv() to src/cli/git.ts with one shared git() helper, fold the
per-file helpers into it, and drop GIT_DIR and the other repository-local
variables from every Git call on an explicit path and from the command
`quest worktree run` and `quest agent` start, keeping -c config.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
@kixelated kixelated changed the title Every Git call ignores inherited repository location Every Git call ignores an inherited repository location Nov 4, 2026
@kixelated
kixelated marked this pull request as ready for review November 4, 2026 07:29
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✅ No new issues found.

Reviewed changes — initial review of head 915b521 against main (58696bc), all 20 files.

  • Shared Git helper — new src/cli/git.ts with discoveryEnv(), git(), and GitError; the variable filter is verbatim Git's own other-repository exception list (sanitize_repo_env keeps exactly GIT_CONFIG_PARAMETERS and GIT_CONFIG_COUNT), so -C-path discovery wins over a hook's inherited location while -c config survives, matching Git itself.
  • Helper fold-in — gitOutput (claims.ts) and the local git helpers in worktree.ts, worktree-hook.ts, move.ts, and github.ts collapse into the shared helper, along with the one-off calls in start.ts push, agent.ts spawnDirectory, move.ts mentions, and worktree.ts ignored. I traced every caller across the old-vs-new semantics (trim vs trailing-newline strip, maxBuffer, error shape, config exit 1, stdin): the only observable deltas are the intended ones, and the old gitOutput message format is byte-identical.
  • Environment for shape-differing helpers — tree.ts, landed.ts, worktree.ts gitAsync, land-apply.ts userGit, and land-fix.ts keep their own spawns and gain env: discoveryEnv(); the left-as-is set (resolve.ts, land.ts, gate, src/runner/) checks out against the sweep of every git spawn in src/.
  • Child-command environments — quest worktree run and quest agent's agent now drop location variables, keeping -c config, as decided on #455; README and --help agree with the behavior.
  • Tests and quest cleanup — the two new tests exercise the hook-inherited environment end to end, and the finished quest is deleted with every link to it (quest check --base origin/main passes).

Verified locally: typecheck, prettier, the suites covering every refactored file, and the new snapshot test. test/worktree.run.test.ts needs a systemd user manager this runner lacks, and test/worktree.test.ts's concurrent-creator test fails identically on origin/main here — both environmental, not from this change.

ℹ️ runner-review.md cites the deleted gitOutput

quest/m0/kix/runner-review.md still cites gitOutput (src/cli/claims.ts) as execFileSync when describing why review()'s network Git calls stall the runner. This PR removes that symbol, so the citation no longer resolves; the doc's conclusion still holds, since the replacement in src/cli/git.ts is also a synchronous spawnSync. No change is required in this PR — noting it so the record can be touched up whenever that quest doc is next edited.

Technical details
# Stale doc citation after `gitOutput` removal

## Affected sites
- `quest/m0/kix/runner-review.md:26-27` — cites `review()` running `git ls-remote --symref` (`src/cli/review.ts:807`) and `git fetch` (`:888`) "through `gitOutput` (`src/cli/claims.ts`), which is `execFileSync`". PR #478 deletes `gitOutput`; `review.ts` now calls the shared `git()` in `src/cli/git.ts`, which is `spawnSync`.

## Required outcome
- The doc's evidence record should name a symbol that exists (or be reworded to describe the mechanism without naming one). Its underlying claim — network Git calls block the runner process — remains true under `spawnSync`.

## Suggested approach (optional)
- A one-line touch-up in a later docs pass; not required for this PR.

Pullfrog  | View workflow run | Using glm-5.3-flash | 𝕏

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kixelated added this pull request to the merge queue Nov 4, 2026
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quest land watch: the merge queue removed this pull request at 915b521 because it conflicts with main (merge_conflict).

The land fixer works on it in the background, and the watcher re-enqueues it at the back of the queue once it is fixed or judged flaky, or hands it back here with what it needs.

(written by quest land watch)

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quest land watch: armed auto-merge on this pull request at 5c71e6a, so it joins the back of the merge queue once its required checks pass, with the land fixer's fix (codex / Codex): Merged base and re·solved worktree conflicts preserving both sides' intent; bun run build, bun run check, and bun run test passed (1044 tests, 5 skipped)..

(written by quest land watch)

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✅ No new issues found.

Reviewed changes — incremental delta against the prior review of 915b521: one merge commit, 5c71e6a, that resolved conflicts against the moved base in worktree-hook.ts and worktree.ts.

  • Extracted superproject() in worktree-hook.ts — the superproject walks in subagentCheckout() and claudeHook() were identical; the helper now carries them once, canonicalizing Git's forward-slash output on Windows exactly as the inlined code did. The WORKFLOW_CHECKOUT comment moved with it.
  • Rewrote submodules() in worktree.ts from a git submodule foreach --quiet --recursive shell call to recursion over the index's gitlinks, avoiding the seconds it costs the shell script on Windows. I traced the semantics: initialized modules only, nested ones under each, canonical paths, no traversal into uninitialized parents — equivalent to foreach --recursive.
  • Extracted gitlinks(), deduplicating a conflicted gitlink's three index stages (ls-files --stage emits one entry per stage). The clean() uninitialized-submodule check that previously inlined the same loop now uses it.
  • Added the base's per-submodule cleanliness checks to clean(): each initialized submodule is checked for modified or untracked files deepest-first, alongside the existing root check.
  • Gated submodule update --init --recursive in Worktrees.create() on the index holding any gitlinks, skipping the no-op call in repositories without submodules.
  • Converted every Git call in the two files to array arguments matching src/cli/git.ts's git(root, args, input?) — mechanical, no behavior change.

Verified locally: bun run check clean; test/worktree.test.ts (45 tests, 1 skipped) and test/snapshot.test.ts (12 tests) pass, including the nested-submodule initialization/preservation suites and the Claude hook suites that exercise the rewritten recursion and extracted helper.

Pullfrog  | View workflow run | Using glm-5.3-flash | 𝕏

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quest land watch: the merge queue removed this pull request at 5c71e6a because it conflicts with main (merge_conflict).

The land fixer works on it in the background, and the watcher re-enqueues it at the back of the queue once it is fixed or judged flaky, or hands it back here with what it needs.

(written by quest land watch)

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codex / Codex land fixer note:

Resolved the review.ts merge conflict by preserving base’s asynchronous fetch and the PR’s Git helper migration, applying discoveryEnv to the async Git call as well. Validation passed: bun run build; bun run check; bun run test (28 files passed, 1056 tests passed, 5 skipped).

(written by codex / Codex)

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quest land watch: armed auto-merge on this pull request at 42a2919, so it joins the back of the merge queue once its required checks pass, with the land fixer's fix (codex / Codex): Merged base and re·solved review.ts conflict, preserving async fetch and Git environment isolation; bun run build, bun run check, and bun run test passed (1056 tests passed, 5 skipped)..

(written by quest land watch)

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✅ No new issues found.

Reviewed changes — incremental delta against the prior review of 5c71e6a: one merge commit, 42a2919, that resolved conflicts in src/cli/review.ts against the moved base.

  • Async fetch redesign folded in — main's fetchBase()/remoteGit() (promisified execFile, network calls off the event loop) replaced the branch's inline sync ls-remote/fetch pair and the standalone defaultBranch(). The dedup is real: remote lookup, fetch, and tracking-ref construction now live in one place, and the duplicated fetch in review() is gone.
  • The environment fix survived the merge — remoteGit's env changed from { ...process.env, GIT_TERMINAL_PROMPT: "0" } to { ...discoveryEnv(), GIT_TERMINAL_PROMPT: "0" }, so the network Git calls now drop a hook's inherited repository-local variables exactly like the sync git() helper does; otherwise the branch's whole thesis would have been silently broken for the calls that reach a remote.
  • Every remaining Git call in review.ts routes through src/cli/git.ts's git(); the gitOutput import and call sites are gone.

Verified locally: tsc (repo + src/core), prettier on the delta, and the full test/review.test.ts suite (51 tests) pass.

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quest land watch: the merge queue removed this pull request at 42a2919 because its merge_group build failed (failed_checks).

The land fixer works on it in the background, and the watcher re-enqueues it at the back of the queue once it is fixed or judged flaky, or hands it back here with what it needs.

Queue / Queue build / Build (job) failure at step Test:

…ads…
    �[90m   |�[39m             �[31m^�[39m
    �[90m1547|�[39m   await enrolled();
    �[90m1548|�[39m   await github({ activity: history() }).service.projectState(repo, "en…

�[31m�[2m⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[1/2]⎯�[22m�[39m

�[41m�[1m FAIL �[22m�[49m test/projects.test.ts�[2m > �[22menrolled project observations�[2m > �[22mwithholds candidates after push {"ref":"refs/heads/trunk"} until a refresh rereads occupancy
�[31m�[1mAssertionError�[22m: expected [] to be null�[39m

�[32m- Expected:�[39m
null

�[31m+ Received:�[39m
[]

�[36m �[2m❯�[22m test/projects.test.ts:�[2m1551:37�[22m�[39m
    �[90m1549|�[39m   expect((await delivery(name, { ...event, ...payload })).status).toBe…
    �[90m1550|�[39m   const cached = await github().service.projectState(repo, "enrollment…
    �[90m1551|�[39m   expect(cached!.project.available).toBeNull();
    �[90m   |�[39m                                     �[31m^�[39m
    �[90m1552|�[39m   expect(readBoard(cached!.project).quests.get("quest/first.md")!.stat…
    �[90m1553|�[39m   const second = github({

�[31m�[2m⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[2/2]⎯�[22m�[39m


�[2m Test Files �[22m �[1m�[31m1 failed�[39m�[22m�[2m | �[22m�[1m�[32m20 passed�[39m�[22m�[90m (21)�[39m
�[2m      Tests �[22m �[1m�[31m2 failed�[39m�[22m�[2m | �[22m�[1m�[32m529 passed�[39m�[22m�[90m (531)�[39m
�[2m   Start at �[22m 09:46:07
�[2m   Duration �[22m 115.49s�[2m (tests 66%, transform 31%, setup 3%)�[22m


##[error]Error: Test timed out in 5000ms.
If this is a long-running test, pass a timeout value as the last argument or configure it globally with "testTimeout".
 ❯ test/projects.test.ts:1546:13



##[error]AssertionError: expected [] to be null

- Expected:
null

+ Received:
[]

 ❯ test/projects.test.ts:1551:37


error: script "test" exited with code 1
error: recipe `_worker-test` failed on line 86 with exit code 1
error: recipe `worker-test` failed on line 83 with exit code 1
error: recipe `_test` failed on line 41 with exit code 1
error: recipe `test` failed on line 30 with exit code 1
##[error]Process completed with exit code 1.
Post job cleanup.
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git version
git version 2.55.0
Temporarily overriding HOME='/var/cache/github-runner-work/_temp/159acc17-772a-432f-9926-f670f985a337' before making global git config changes
Adding repository directory to the temporary git global config as a safe directory
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git config --global --add safe.directory /var/cache/github-runner-work/quest/quest
Removing SSH command configuration
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git config --local --name-only --get-regexp core\.sshCommand
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :"
Removing HTTP extra header
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :"
Removing includeIf entries pointing to credentials config files
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git config --local --name-only --get-regexp ^includeIf\.gitdir:
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git submodule foreach --recursive git config --local --show-origin --name-only --get-regexp remote.origin.url
Post job cleanup.
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git version
git version 2.55.0
Temporarily overriding HOME='/var/cache/github-runner-work/_temp/1473e241-bff4-4281-8245-e398cdf0081e' before making global git config changes
Adding repository directory to the temporary git global config as a safe directory
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git config --global --add safe.directory /var/cache/github-runner-work/quest/quest
Removing SSH command configuration
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git config --local --name-only --get-regexp core\.sshCommand
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :"
Removing HTTP extra header
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :"
Removing includeIf entries pointing to credentials config files
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git config --local --name-only --get-regexp ^includeIf\.gitdir:
[command]/nix/store/lg46w7hrjx7kylsh6645c9l975i8h43b-git-2.55.0/bin/git submodule foreach --recursive git config --local --show-origin --name-only --get-regexp remote.origin.url
A job completed hook has been configured by the self-hosted runner administrator
##[group]Run '/nix/store/gx2v6q84b0w43bafm0whkdx93qyxbpps-ci-cache-gc.sh/bin/ci-cache-gc.sh'
shell: /nix/store/1mv3qz005gkbalxfghk4y3s8ayv4d2dl-bash-interactive-5.3p15/bin/bash --noprofile --norc -e -o pipefail {0}
##[endgroup]
evicted 0 objects and 0 action results (5.0 MiB logical); 49.8 GiB logical remain
dropped 1 stale checkout records
dropped 6 session event streams
Cleaning up orphan processes

Queue / Queue (job) failure at step Require the build to pass:

Current runner version: '2.338.2'
##[group]Runner Image Provisioner
Hosted Compute Agent
Version: 20261021.618
Commit: 21505ad2541d5be6135ed84fc33697146cf75b8e
Build Date: 2026-10-21T00:45:21Z
Worker ID: {43db67b9-ce44-4943-9359-3123b6f0c723}
Region: northcentralus
Cloud: Azure
##[endgroup]
##[group]Operating System
Ubuntu
24.04.5
LTS
##[endgroup]
##[group]Runner Image
Image: ubuntu-24.04
Version: 20261025.353.1
Included Software: https://github.com/actions/runner-images/blob/ubuntu24/20261025.353/images/ubuntu/Ubuntu2404-Readme.md
Image Release: https://github.com/actions/runner-images/releases/tag/ubuntu24%2F20261025.353
##[endgroup]
##[group]GITHUB_TOKEN Permissions
Contents: read
Metadata: read
PullRequests: read
##[endgroup]
Secret source: Actions
Cache mode: write
Prepare workflow directory
Prepare all required actions
Complete job name: Queue
##[group]Run [[ "$RESULT" == success ]] || { echo "::error::the queue build ended $RESULT" >&2; exit 1; }
�[36;1m[[ "$RESULT" == success ]] || { echo "::error::the queue build ended $RESULT" >&2; exit 1; }�[0m
shell: /usr/bin/bash -e {0}
env:
  RESULT: failure
##[endgroup]
##[error]the queue build ended failure
##[error]Process completed with exit code 1.
Cleaning up orphan processes

(written by quest land watch)

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codex / Codex land fixer note:

The queue failures did not recur in a complete just test run: 1,056 CLI tests passed (5 skipped), both CLI builds and lifecycle checks passed, and all 531 Worker tests plus the seeded-server check passed. bun run check also passed. No changes were made; pr-478 remains at 42a2919.

The original failures were in enrolled project observations > withholds candidates after ... until a refresh rereads occupancy: the pull_request synchronize case timed out after 5000ms, and the push refs/heads/trunk case reported expected [] to be null. These appear intermittent and should be followed up. The PR changes CLI Git handling; the Worker and core code are identical to base, so there is no evidence to attribute these failures to this PR.

(written by codex / Codex)

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quest land watch: re-enqueued this pull request at 42a2919, at the back of the merge queue, unchanged, since the land fixer judged the failure flaky: cloudflare/test/projects.test.ts: withholds candidates after pull_request synchronize / push refs/heads/trunk until a refresh rereads occupancy.

(written by quest land watch)

Merged via the queue into main with commit 42e3ad1 Nov 4, 2026
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