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Naturalis Biodiversity Center

36 followers
Leiden, the Netherlands
https://www.naturalis.nl

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barcode-constrained-phylogeny barcode-constrained-phylogeny Public

Pipeline for building topologically-constrained phylogenies from DNA barcode data

Python 2 3

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All C Dockerfile HTML Java JavaScript Jupyter Notebook OpenEdge ABL Perl PHP Puppet Python R Shell Terra TeX Web Ontology Language

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Showing 10 of 187 repositories

DABDGE Public
Data Analysis from Genes to Ecosystems

naturalis/DABDGE's past year of commit activity

Python 0 CC0-1.0 0 16 0 Updated Sep 21, 2026
sdmdl Public
Species Distribution Modelling using Deep Learning

naturalis/sdmdl's past year of commit activity

Python 31 MIT 13 4 14 Updated Sep 18, 2026
evospaice Public
Repository for the 2026 Microsoft hackathon in Dublin - Naturalis use case

naturalis/evospaice's past year of commit activity

Python 0 1 2 1 Updated Sep 17, 2026
DWCAConfig Public
DWCA Configuratie bestanden om data te downloaden uit ES (NBA)

naturalis/DWCAConfig's past year of commit activity

Shell 1 2 1 0 Updated Aug 31, 2026
BeeGees Public Forked from bge-barcoding/BeeGees
Snakemake workflow for recovering barcode sequences from genome skim data generated from museum (hDNA) specimens.

naturalis/BeeGees's past year of commit activity

Python 0 MIT 4 0 0 Updated Aug 19, 2026
galaxy-tool-prinseq-sequence-analysis Public
transferred from old galaxy

naturalis/galaxy-tool-prinseq-sequence-analysis's past year of commit activity

Shell 0 0 0 0 Updated Aug 7, 2026
galaxy-tools-ci-template Public

naturalis/galaxy-tools-ci-template's past year of commit activity

0 0 0 0 Updated Aug 6, 2026
galaxy-tool-BLAST Public
A new tool and wrapper for the identification with blastn

naturalis/galaxy-tool-BLAST's past year of commit activity

Python 0 2 2 1 Updated Aug 6, 2026
barcode_validator Public
Standardized validation of DNA barcodes

naturalis/barcode_validator's past year of commit activity

Python 2 Apache-2.0 7 6 0 Updated Jul 22, 2026
galaxy-tool-edentity-metabarcoding-pipeline Public

naturalis/galaxy-tool-edentity-metabarcoding-pipeline's past year of commit activity

Python 1 Apache-2.0 0 1 1 Updated Jul 22, 2026

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