Issues

• Template generation pipeline crashing on the Compute Canada cluster

  neuropoly/template#86 · Filter by author rohanbanerjee opened on Apr 4, 2024
  6

• The derivatives are not copied after the preprocess_segment.sh runs

  neuropoly/template#74 · Filter by author rohanbanerjee opened on Aug 9, 2023
  1

• Add first_disc option to configuration_default.json

  neuropoly/template#64 · Filter by author NadiaBlostein opened on Aug 7, 2023

• Update to stable version of SCT

  neuropoly/template#63 · Filter by author NadiaBlostein opened on Aug 7, 2023

• figure out what is going with ICBM152 in preprocess_normalize.py

  neuropoly/template#55 · Filter by author NadiaBlostein opened on Jul 10, 2023

• Make sure the comments description each function in preprocess_normalize are correct

  neuropoly/template#54 · Filter by author NadiaBlostein opened on Jul 10, 2023

• pep-8 python code style convention

  neuropoly/template#49 · Filter by author rohanbanerjee opened on Jul 6, 2023

• Make schematic of worflow

  neuropoly/template#48 · Filter by author jcohenadad opened on Jul 6, 2023
  1

  

• Make the preprocessing pipeline rely on SC segmentation OR centerline

  neuropoly/template#33 · Filter by author jcohenadad opened on Jun 29, 2023

• Centerline extraction should not be done in template_preprocessing.py

  neuropoly/template#32 · Filter by author jcohenadad opened on Jun 29, 2023

• Make data-agnostic versions of scripts have suffix _default

  neuropoly/template#27 · Filter by author NadiaBlostein opened on Jun 29, 2023

• SCT version - update to the stable version

  neuropoly/template#23 · Filter by author rohanbanerjee opened on Jun 27, 2023

• Once SCT version is out, update the README that indicates which version of SCT this pipeline relies on

  neuropoly/template#21 · Filter by author jcohenadad opened on May 17, 2023

• Mix between system call and library import

  neuropoly/template#19 · Filter by author jcohenadad opened on May 16, 2023

• Link not working to sample dataset

  neuropoly/template#8 · Filter by author NadiaBlostein opened on Oct 31, 2022
  3

• Mis-alignment visible in final template

  neuropoly/template#5 · Filter by author jcohenadad opened on Nov 3, 2018

• Unify template-creation framework

  neuropoly/template#4 · Filter by author jcohenadad opened on Nov 3, 2018
  1