All pull requests

Pull requests

• Add support for extra fastq-dl parameters

  #415·SwiftSeal opened Oct 28, 2026·1 of 11 tasks·

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• feat: apply template sync PR 412 with nf-migrate

  #414·Skitionek opened Oct 28, 2026·

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  2

• Merge dev into template sync PR #412

  #413·Skitionek opened Oct 28, 2026·

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  1

• Important! Template update for nf-core/tools v4.2.1

  #412·nf-core-bot opened Oct 26, 2026Member·

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• Lower SRA_FASTQ_FTP resources to 1 CPU and 1 GB

  #411·filipetessaro opened Oct 25, 2026·3 of 6 tasks·

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• Route input ids to a subworkflow by their source

  #410·Tabea01 opened Oct 23, 2026Contributor·5 of 11 tasks·

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  10

• Prepare fetchngs for multiple data types (proposal 116)

  #406·Tabea01 opened Oct 8, 2026Contributor·7 of 11 tasks·

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  17

• AWS mirrored SRA file download

  #355·tanaes opened Aug 15, 2025·6 of 11 tasks·

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  5

• POC: Rewrite SRA_RUNINFO_TO_FTP as native process

  #337·bentsherman opened Feb 21, 2025·

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  · 1.13.0
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• Cloud tests switched to using a matrix strategy

  #289·adamrtalbot opened Feb 22, 2024Contributor·10 tasks·

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  · 1.13.0
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• optimized resources

  #269·edmundmiller opened Feb 6, 2024Contributor·

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  · 1.13.0
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• Implement ffq

  #100·drpatelh opened Jun 30, 2022Member·

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  · 1.14.0
  2