All pull requests

Pull requests

• Switch fix-linting to the hardened nf-core/actions reusable workflow

  #2338·BilalsGituation opened Oct 17, 2026·

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• Add simulated ROH test dataset

  #2337·Othmanaljurayyad opened Oct 16, 2026·

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• Fix mixed genotyping samplesheet URLs

  #2309·ayeletperes opened Oct 12, 2026·

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• Add population map with unassigned specimens and intermediate test files

  #2295·kathrynmurie opened Oct 1, 2026·

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• Add new samplesheet for fq lint check

  #2286·fhausmann opened Sep 21, 2026·

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• Point Renovate at the public org preset

  #2230·edmundmiller opened Aug 20, 2026Contributor·

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• files for modules testing

  #2182·aaryanjaitly opened Jul 26, 2026·

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• cellpheno/nis: add test tile + models

  #2136·Chrisa142857 opened Jul 9, 2026Member·

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  3

• Add tar archive of MTX

  #2119·nictru opened Jun 25, 2026·

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• Make test samplesheet smaller

  #2115·FernandoDuarteF opened Jun 22, 2026·

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• Update internal repo docs for adding modules

  #2047·jfy133 opened May 11, 2026Member·

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  12

• Add subset SQLite Cell Painting Gallery example data.

  #2028·mikefeixu opened Apr 29, 2026·

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• Add ONT BAM and bedMethyl test data: HG002 GIAB 10-read subset (PAW70337)

  #1969·sahuno opened Apr 6, 2026·4 tasks done·

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  5

• Added test data for moleculardocking

  #1966·pritampanda15 opened Apr 1, 2026·

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• Add msproteomics test datasets

  #1953·an-altosian opened Mar 25, 2026·

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  10

• Add full test dataset

  #1949·sarata00 opened Mar 24, 2026·

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• Add pre-computed neighbors to PCA h5ad files

  #1944·nictru opened Mar 21, 2026·

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• Add example samplesheet with differen file endings for pipeline mspepid

  #1920·svenbioinf opened Mar 13, 2026·

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• Add single-cell spatial transcriptomics test data for STEM module

  #1898·askmadsen opened Mar 11, 2026·

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• Adding toy samplesheet (synthetic data)

  #1851·quentinblampey opened Jan 28, 2026·

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• Add yallhap test data for Y-chromosome haplogroup classification

  #1842·trianglegrrl opened Jan 21, 2026·

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• [DO NOT MERGE] test new ci setup

  #1805·mashehu opened Nov 27, 2025Member·

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• added fastq-chr21 datasets

  #1794·Chromojones opened Nov 21, 2025·

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• Update learnmsa args in toolsheet

  #1785·luisas opened Nov 12, 2025·

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• add bidcell toy reference

  #1720·an-altosian opened Aug 27, 2025·

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