All pull requests

Pull requests

• TASK-7791 - Portpatch v6.5.0 -> release-7.x.x

  #733·juanfeSanahuja opened Jul 2, 2025·

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  1

• TASK-6565 Ensure the CellBase DB adaptors are updated to reflect the latest data releases

  #700·jtarraga opened Jul 19, 2024·

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  11

• TASK-6441 - Include API-KEY for CADD scores

  #699·jtarraga opened Jul 18, 2024·

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• TASK-5388 - Add AlphaMissense predictions

  #698·jtarraga opened Jul 1, 2024·

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• TASK-5387 - Add Polygenic Scores (PGS)

  #697·jtarraga opened Jul 1, 2024·

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• fix truncation of results in phased queries where checkAminoAcidChange=TRUE

  #690·julie-sullivan opened May 10, 2024·

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• Fix insertion with n consequence type

  #672·awab-ahmed opened Sep 25, 2023·

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• build(deps): bump jetty-server from 9.4.17.v20190418 to 9.4.51.v20230217

  dependencies
  #657·dependabot[bot] opened Jun 13, 2023·

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• TASK-2528 Fix CellBase 5.2.x variant-annotation command: java.lang.NoClassDefFoundError: org/mortbay/util/ajax/JSON

  #635·jtarraga opened Dec 22, 2022·

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  1

• TASK-2428 - Pycellbase cbtools not working for cellbase v5

  bugclient
  #631·dapregi opened Nov 29, 2022·

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  1

• add an optional filter to VCF variant annotation

  #630·julie-sullivan opened Nov 21, 2022·

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• fix consequence types for CNVs with 2 copies

  #629·julie-sullivan opened Nov 21, 2022·

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• fix cnvpadding param. TEST FAILING

  #628·julie-sullivan opened Nov 16, 2022·

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• MNVs - other variants considered as part of phased MNV annotation

  #624·julie-sullivan opened Nov 3, 2022·

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• Remove ensembl compara and funcgen

  #623·julie-sullivan opened Nov 2, 2022·

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• ClinVar - add associated scvIds, vcvIds, rcvIds to additional properties

  #621·julie-sullivan opened Oct 12, 2022·

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• chore: Add unit tests for HgvsCalculator

  #609·squinker opened Sep 6, 2022·

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• Add query retry to PyCellBase v5

  enhancement
  #562·julie-sullivan opened Jul 6, 2021·

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  · v5.0.0
  2

  

• Intelligent avoid of files re-download

  #405·Lucioric2000 opened Jun 24, 2019·

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  · v5.0.0
  2

  

• Feature improve tests

  #368·wbari opened Nov 28, 2017·

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• Feature cache

  #357·wbari opened Sep 7, 2017·

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• latest version of cellbaseR

  #334·melsiddieg opened Apr 26, 2017·

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