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Fix CSR Spearman scores and pbmc_multiome failures, add a seed to all methods - #83

Merged

rcannood merged 11 commits into

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fix/correlation-csr-guanlab-pbmc-multiome

Nov 3, 2026

Merged

Fix CSR Spearman scores and pbmc_multiome failures, add a seed to all methods#83
rcannood merged 11 commits into
mainfrom
fix/correlation-csr-guanlab-pbmc-multiome

Commits on Oct 25, 2026
- correlation: rank CSC matrices, so CSR predictions get the right Spearman scores
  
  VladimirShitov
  and
  claude
  committed
  fef5a95
Commits on Oct 26, 2026
- guanlab_dengkw_pm: solve the kernel ridge regression with numpy's 64-bit-integer LAPACK
  
  VladimirShitov
  and
  claude
  committed
  0d84b48
- simple_mlp: keep the inputs sparse and densify one batch at a time
  
  VladimirShitov
  and
  claude
  committed
  a79b960
- Seed every stochastic method and control
  
  VladimirShitov
  and
  claude
  committed
  cbc4589
Commits on Nov 3, 2026
- Move --seed to the method and control method apis
  rcannood
  committed
  cba36f5
- ss_opm, senkin_tmp, scbutterfly: use --seed instead of a hard-coded seed
  rcannood
  committed
  0a3b5ab
- correlation: the CSR ranking bug is fixed in dynutils 1.0.13
  rcannood
  committed
  97755ab
- guanlab_dengkw_pm: the Cholesky failure depends on the OpenBLAS kernel, not its integer width
  rcannood
  committed
  6a3dba5
- add --seed to run_benchmark
  rcannood
  committed
  ceb4806
- shorten the changelog
  rcannood
  committed
  c8b89bb
- guanlab_dengkw_pm: list what was tried for the kernel ridge solve
  rcannood
  committed
  3b0b366