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scaffold-project.py, validate-pins.py, repo_shape.py: open-glass and open_glass share one SHAPE_PIN_SOURCE_<PRODUCT>, so --pin refuses the pair and validate-pins.py notes a declared one and reads the variable for neither (#275) - #409

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brettheap merged 8 commits into
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fix/pin-source-env-collisions
Oct 13, 2026

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@brettheap brettheap commented Oct 12, 2026 •

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Lane: openreposhape-5 (openRepoShape-5)
Claim: #275 (comment)

What was wrong

pin_source_env_name turns every character outside [A-Z0-9_] into _, so
open-glass, open_glass and open.glass are three legal product names, with
three pin files (contracts/<product lowercased>-pin.yaml), and one variable,
SHAPE_PIN_SOURCE_OPEN_GLASS. On ab623dd (this branch's main parent; the same
rows reproduce on c7c02fa), with the issue's own probe against local bare
remotes and a gh that exits 97:

step ab623dd this head
scaffold-project.py --pin open-glass@<A> --pin open_glass@<B> exit 0, three repositories exit 2 scaffold-pin-collides, nothing created
validate-pins.py, no source, on a project that already declares the pair exit 0, both skips offer SHAPE_PIN_SOURCE_OPEN_GLASS exit 0, one note neutral-pin-source-collides; the skips offer --pin-source <product>=<path> and a sibling checkout only
SHAPE_PIN_SOURCE_OPEN_GLASS=<open-glass> neutral-pin-source-unreadable for open_glass, exit 1 exit 0, the note; the variable is read for neither pin, so each pin is read from its own source or skipped
SHAPE_PIN_SOURCE_OPEN_GLASS=<open_glass> neutral-pin-source-unreadable for open-glass, exit 1 the same
--pin-source open-glass=... --pin-source open_glass=... exit 0 both pins recompute, exit 0, the note

What changed

Every variable name is kept: an operator may have set one and the docs name
them. What is done instead:

Each reader of pin_source_env_name, decided:

site decision
scaffold-project.py --pin refuse (above)
validate-pins.py rule 2 and the skip hint a note, and the variable is neither read nor offered for a shared product
repo_shape.py resolve_link_source (via link_pins_from_trees) skip the variable when another link of the chain shares it
repo_shape.py _chain_link_findings hint omit the variable for a shared link
adopt-project.py --pin, plan, check, execute not in this PR, see below

Fix round 1 (from the review of 34dbd86)

The design change, the lane's choice, and one Brett can reverse. The first
round made neutral-pin-source-collides a FINDING. Main through ab623dd
scaffolds such a project (--pin open-glass@A --pin open_glass@B exits 0), and
update-shape.py apply runs the NEW validate-pins.py over the rewritten root,
so for a project already declaring the pair the finding ended every apply as
REFUSED update-validators-red, rolled back, for this update and every later
one, until a person deleted a true declaration of descent. AGENTS.md tells an
agent never to edit "a pinned file, a digest or a manifest to make a row go
green", and the finding's remediation was exactly that, so the person was
locked out. The coordinator chose
the review's option (b): it is a NOTE now. The guard stays (the variable is read
for neither pin), each pin still verifies from its own source, scaffold still
refuses a new pair, and validate-pins.py says the rest in one line. To put the
finding back, change report.advise to report.finding in
_report_pin_source_collisions, give the finding the remediation 34dbd86 had,
and turn the tests that expect the note (and
test_a_project_declaring_a_colliding_pair_takes_a_shape_update) back into
exit 1; the first round's versions of all of them are on 34dbd86.

  • Proved on a real old project. Main (ab623dd) scaffolded the pair into
    local bare remotes; update-shape.py apply to the first round's head 34dbd86
    exited 2 REFUSED update-validators-red and rolled back (git branch shows
    only main); to this head it exits 0, the project's validator passes and
    prints the note, and the doctor's pins row is ok before and after. The
    doctor prints passes for a validator that exits 0 and does not echo its
    stdout, so the note itself is visible in update-shape.py apply's output and
    in validate-pins.py's, and the verdict moves for no reason but the update
    (COMPLIANT, SHAPE BEHIND to COMPLIANT). It is now a test:
    test_a_project_declaring_a_colliding_pair_takes_a_shape_update, over local
    stand-ins beside the project, so no gh is asked.
  • N2, collisions by the variable. Pairs were decided by casefold(), but
    the pin file is lower(). openß/openss, openſ/opens, openfi/openfi
    and openς/openσ share a variable and have two pin files, and were never
    found. They are now, from the pin-file fold (pin_product_key). A pool of 31
    names is checked pairwise against neutral_pin_path and
    pin_source_env_name themselves, and no single product is ever a collision.
    They are reachable only from a hand-written project.yaml.
  • N1, Windows. The guard's only test needed the #! gh stub and was
    skipped on Windows. test_a_shared_variable_answers_for_neither_pin_with_no_gh
    puts a checkout of each pin beside the project, names one in the variable, and
    needs no gh: on ab623dd it is neutral-pin-source-unreadable, here each pin
    reads its own sibling. The hint and the non-ASCII rows are tested in-process,
    with no skip and no filesystem.
  • N3, the hint. For a product two pins share, the skip hint offers the keyed
    --pin-source <product>=<path>: the bare form answers for every pin with no
    more specific source, so with two pins it gives the other the finding this
    issue is about.
  • N4, no action. The trailers of the earlier commits are settled in the
    squash message. N5 is this title, which now names repo_shape.py.
  • scaffold-project.py is not touched this round: fix/adopt-pin-writes-pin-file
    moves that code, and the change would only conflict with it.

Left out

Evidence

All on the head, with the throwaway venv holding git-filter-repo 2.47.0, a gh
that cannot be reached (a stub first on PATH, GH_TOKEN bogus, an empty
GH_CONFIG_DIR), and the repository-local user.name blanked at command-line
scope, as the standard's checkout sets one that two scaffold tests read.

  • tests/test_pin_source_env_collisions.py is 137 tests and passes on this
    head. Laid over 34dbd86, 50 fail and 87 pass: the note and update tests, the
    non-ASCII rows, the hint, the sibling guard, and pin_product_key itself
    (which 34dbd86 does not have); the scaffold refusals, the chain readers and
    the controls hold on both.
  • Targeted, run on ad6f569, whose tree differs from this head in
    tests/test_pin_source_env_collisions.py only (the last edits made one
    comparison read the committed blob and wrapped one line): the new file,
    test_pin_validator, test_neutral_pin_validator, test_cli_reference,
    test_manifest_validator, test_naming_policy and test_repo_hygiene
    445 passed; the scaffold pin, collision, referent-chain, leg-path and e2e
    files 245 passed; tests/test_update_shape*.py 218 passed, 3 skipped
    (junctions, NTFS only); tests/test_shape_doctor.py 254 passed, 3 skipped
    (the PowerShell line, a Windows host only).
  • On this head itself: the new file, test_repo_hygiene, test_cli_reference,
    test_pin_validator and test_neutral_pin_validator 244 passed.
  • This head merged with origin/main a983e6a, in a throwaway worktree: the new
    file, test_pin_validator, test_neutral_pin_validator, the scaffold pin,
    collision, referent-chain and e2e files, the whole doctor file and
    test_cli_reference 590 passed, 3 skipped (the PowerShell line); the new
    file alone, in its final form, 137 passed. origin/main has moved twice
    since; the merge-tree below is against it.
  • Twelve mutation probes, each hunk reverted alone: all caught. The
    note-to-finding one is caught by the update test (a committed mutant, since the
    test clones the repository's HEAD) and the guards by the sibling test, run with
    every test that needs a #! stub deselected as a Windows runner would;
    the hint one by an in-process test.
  • Nothing was run on macOS or Windows.

Merge-tree

git merge-tree --write-tree of this head (6494714) against origin/main 1f90a0f
is clean, and so is the merge of origin/main a983e6a, which the merged-tree runs
above used. #312, #309, #270, #268, #228, #245 and #351 have landed. The rest
were computed on ad6f569 (the same tree but for one test file) against
a983e6a. Open PRs touching this branch's files, all clean against the head:
#314, #355 and #373 (scaffold-project.py), #343 (validate-pins.py), #390
(repo_shape.py) and #394 (repo_shape.py, which conflicts with origin/main by
itself). The other 25 open PRs and the lane-5 branches
fix/adopt-check-link-and-manifest, fix/scaffold-free-text-values,
fix/family-init-values, docs/adopt-execute-exits,
fix/yaml-flow-brackets-surrogates and fix/adopt-pin-writes-pin-file
(#273's, 7a94b6b, also clean for this head) are clean too. #356, #382 and
fix/adopt-record-submodule-placement conflict with origin/main and not with
this head; #358, fix/adopt-late-failure-notice and
fix/adopt-plan-quote-yaml-keywords conflict with both, with origin/main by
themselves, so they are not this branch's. Neither are the five PRs below #200
that origin/main has not landed (#94, #96, #98, #100 and #161), which conflict
with it too. The PR set is read from the refs under refs/pull/ that
origin/main's history has no (#n) subject for, not from GitHub, so a closed
one may be in it.

One conflict, with fix/link-source-values (#338, 40762ca) in
scripts/repo_shape.py, four hunks.
Not resolved in either branch; take both
sides: (1) resolve_link_source's signature, default_source=None, env_shared: bool = False, *, tried: list | None = None; (2) its docstring, both
paragraphs; (3) link_pins_from_trees's docstring, both paragraphs; (4) its
call, default_source, pin_product_key(name) in shared, tried=asked) followed
by #338's if tried is not None: tried[name] = asked. The auto-merged
resolve_link_source body already composes: a shared variable is never an
env candidate and so never appears in #338's tried.

Known limits after the re-verify (APPROVE WITH NITS, 0/0/3, at 6494714). For the four non-ASCII pairs this change now detects (ß/ss, ſ/s, fi/fi, ς/σ), the keyed --pin-source <product>=<path> form does NOT separate the two pins: #312's source lookup folds both keys into one, so one pin can get a false unreadable finding. A sibling checkout does separate them. Only a hand-written project.yaml can declare such a pair. The doctor's pins row still prints only "passes" for a validator that passes, so it does not carry the collision note; that needs shape-doctor.py, and is left for a follow-up. To restore the finding, the report.advise(...) call becomes a report.finding(...) call with that method's own arguments; it is not a literal word swap.

Closes #275

🤖 Generated with Claude Code

Summary by Sourcery

Prevent products that share a pin-source environment variable from being created or verified ambiguously while preserving compatibility for existing projects.

Bug Fixes:

  • Prevent ambiguous pin-source environment variables from being used for multiple distinct products, avoiding incorrect pin verification.

Enhancements:

  • Centralize detection of pin-source environment collisions based on distinct pin files.
  • Refuse scaffolding colliding pins, report existing collisions as non-blocking validator notes, and adjust chain-source hints and resolution accordingly.

Tests:

  • Add comprehensive coverage for punctuation, casing, non-ASCII product names, scaffold refusal behavior, validator notes, update compatibility, source hints, and chain readers.

brettheap and others added 3 commits October 12, 2026 11:39
…ducts whose names differ only in `-`, `.` or `_` share one `SHAPE_PIN_SOURCE_<PRODUCT>`, so `--pin` refuses the pair and `validate-pins.py` reports it as `neutral-pin-source-collides` and reads the variable for neither, where one checkout answered for both pins and the other was a `neutral-pin-source-unreadable` finding (#275)

`pin_source_env_name` maps every character outside `[A-Z0-9_]` to `_`, so
`open-glass`, `open_glass` and `open.glass` are three legal names, three pin
files and ONE variable. `scaffold-project.py --pin open-glass@<A> --pin
open_glass@<B>` scaffolded the pair (exit 0); the project's `validate-pins.py`
then gave whichever checkout `SHAPE_PIN_SOURCE_OPEN_GLASS` named to BOTH pins
and reported the one it was not a checkout of as `neutral-pin-source-unreadable`
(exit 1, a red `validate.yml`); with no source, both skip notes offered the same
variable as the way to verify either.

Every variable name is kept: an operator may have set one and the docs name
them. The pair is refused where it is declared instead.

`repo_shape.pin_source_env_collisions(products)` is the one pure answer,
`{variable: [products]}` for each variable two or more DISTINCT products share,
distinct after a casefold (the fold of the pin file, `--pin-source` and
`--link-source`), so one product typed twice or in two cases is never a
collision (that is #241's file collision). `pin_source_env_shared` is the set of
casefolded names it implies.

- `scaffold-project.py`: `_refuse_colliding_pins` names each variable's `--pin`
  arguments as typed after #241's sentences, in one `scaffold-pin-collides`
  refusal, dry run and real run alike, before any process starts and ahead of
  the leg-path refusal. #241's own wording and remediation are unchanged when
  only a file collides.
- `validate-pins.py`: one `neutral-pin-source-collides` finding per variable,
  naming every product and the variable. A product whose variable is shared does
  not read it (rule 2 of `resolve_neutral_pin_source`) and its skip hint stops
  offering it, so the pin the variable was not a checkout of is no longer
  reported against the project. A variable one product has to itself reads and is
  offered exactly as before.
- `repo_shape.py` chain readers: `link_pins_from_trees` does not read a variable
  two links of the chain share, and the `declared-unverified` hint stops naming
  it. Only a hand-written chain can have two such links.

`adopt-project.py` is not changed: its `--pin` half arrives with #273, which
routes adopt through `pin_source_env_collisions`.

Lane: openreposhape-5 (openRepoShape-5)
Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>
…ate-pins.py conflicted in seven hunks where #312's PinSources replaced the keyed_sources/default_source parameters, kept #312's side in all seven and added #275's env_shared and shared parameters, the neutral-pin-source-collides finding and its docstring paragraph on top

The one conflict was templates/assembly-root/scripts/validate-pins.py, in
resolve_neutral_pin_source (signature and docstring),
_recompute_neutral_pin_digest (signature and its resolver call),
_check_one_neutral_product_pin (signature and its call) and
_check_neutral_product_pins (docstring and body). #312 landed (8cdca5e) with the
same file blob as the PR head implQ resolved against, so the resolution is
implQ's: every hunk keeps #312's PinSources, its 3-tuple return and its
_note_unused_pin_sources call, and adds #275's env_shared parameter (rule 2 reads
no variable another pin shares), the shared frozenset, the skip hint that omits a
shared variable, and _report_pin_source_collisions. scaffold-project.py merged
without a conflict over #309's remediation text.

Lane: openreposhape-5 (openRepoShape-5)
Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>
…ote and no finding, and two declarations are one product when they share a pin file and not a casefold, so a project that already declares `open-glass` and `open_glass` takes `update-shape.py apply` again, and `openß` beside `openss` is found (#275)

Fix round 1 on #275, from the review of 34dbd86.

The first round made two declared pins that share one
`SHAPE_PIN_SOURCE_<PRODUCT>` a FINDING. Main through ab623dd scaffolds such a
project (`--pin open-glass@A --pin open_glass@B` exits 0), and `update-shape.py
apply` runs the NEW `validate-pins.py` over the rewritten root, so the finding
ended every apply as `REFUSED update-validators-red`, rolled back, for this
update and every later one, until a person deleted a true declaration of
descent, which AGENTS.md tells an agent never to do. It is a NOTE now, the
lane's choice and one Brett can reverse: the guard stays, so the variable is
read for neither pin and each pin verifies from its own source, and the note
names both pins, the variable and the keyed `--pin-source <product>=<path>`,
and says which declaration stays is the human's decision. `scaffold-project.py`
still refuses a NEW pair, so the situation is not created anew.

Two declarations are now one product when they are one pin file
(`pin_product_key`, `lower()`, the fold `contracts/<product lowercased>-pin.yaml`
is named by) and not when `casefold()` says so. `openß` and `openss`, `openſ`
and `opens`, `openfi` and `openfi`, `openς` and `openσ` share a variable and have
two pin files, and were never found; a hand-written `project.yaml` is the only
way to declare them.

The skip hint for a product two pins share offers the keyed `--pin-source
<product>=<path>`, since the bare form answers for every pin with no more
specific source. The guard now has a test that needs no `gh` (a sibling
checkout beside the project for each pin, the variable naming one of them), so
it runs on Windows, and the hint and the non-ASCII rows are tested in-process.
A project that declares a pair takes `apply`, and the doctor's `pins` row stays
`ok` before and after (`test_a_project_declaring_a_colliding_pair_takes_a_shape_update`).

Lane: openreposhape-5 (openRepoShape-5)
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
@brettheap

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(lane openRepoShape-5, 2026-10-12T16:19Z) @codex review

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Reviewer's Guide

The PR introduces a single pin-file-aware collision model for non-injective SHAPE_PIN_SOURCE_* names, refuses ambiguous pairs during scaffolding, safely treats collisions as non-failing validator notes for legacy projects, avoids ambiguous variables in chain readers, and validates the behavior with extensive regression tests.

Sequence diagram for validating colliding pin sources

sequenceDiagram
    participant V as validate-pins.py
    participant R as repo_shape.py
    participant E as Environment
    participant S as PinSources
    participant C as PinCheckout
    V->>R: pin_source_env_collisions(products)
    R-->>V: shared variable groups
    V->>V: report neutral-pin-source-collides
    loop each declared product
        V->>R: pin_product_key(product)
        R-->>V: shared status
        V->>S: resolve_neutral_pin_source(product, env_shared)
        alt shared variable
            S-->>V: skip environment variable
            S->>C: use keyed source or sibling checkout
        else private variable
            S->>E: read pin_source_env_name(product)
            E-->>S: checkout path
        end
    end
Loading

Flow diagram for pin source collision handling

flowchart TD
    A["Declared products or --pin arguments"] --> B[pin_source_env_collisions]
    B --> C{Shared variable and distinct pin files?}
    C -->|No| D[Normal source resolution]
    C -->|Yes| E{Entry point}
    E -->|Scaffold| F[Refuse scaffold-pin-collides]
    E -->|validate-pins.py| G[Report neutral-pin-source-collides note]
    E -->|Chain reader| H[Skip shared environment variable]
    G --> I[Use keyed --pin-source or sibling checkout]
    H --> I
Loading

File-Level Changes

Change Details Files
Centralize detection of distinct products that map to the same pin-source environment variable.
  • Add pin-file-based product identity using lowercased names.
  • Return shared environment variables and affected products in stable input order.
  • Ignore repeated declarations of the same pin file while detecting collisions.
scripts/repo_shape.py
Prevent newly scaffolded projects from declaring ambiguous pin-source variable pairs.
  • Reject colliding --pin products with scaffold-pin-collides before any repository/process work.
  • Include typed arguments, products, shared variable, and combined remediation in refusal output.
  • Preserve existing file-collision behavior and make dry-run and real-run responses identical.
scaffold-project.py
Make existing projects safe and updateable when pin-source variables collide.
  • Report one non-failing neutral-pin-source-collides note per shared variable.
  • Skip the shared environment variable for every affected pin while retaining keyed sources and sibling checkout resolution.
  • Remove the shared variable and bare-source options from affected skip hints, while preserving them for unshared products.
templates/assembly-root/scripts/validate-pins.py
Prevent ambiguous environment variables from being used during referent-chain pin resolution.
  • Skip shared variables for links in the same chain.
  • Keep explicit keyed link sources functional.
  • Omit shared variables from declared-unverified remediation hints.
scripts/repo_shape.py
Add comprehensive regression coverage for collision detection, CLI refusal, validation behavior, updates, Unicode edge cases, and chain resolution.
  • Test punctuation and non-ASCII names against actual pin-file identity and environment naming.
  • Cover no-process scaffold refusal, validation notes and hints, sibling/source fallback, and update-shape apply compatibility.
  • Verify unchanged behavior for distinct variables and explicit keyed sources.
tests/test_pin_source_env_collisions.py

Assessment against linked issues

Issue Objective Addressed Explanation
#275 Prevent a shared SHAPE_PIN_SOURCE_<PRODUCT> variable from being used as the source for multiple distinct neutral products or chain links. ✅
#275 Prevent newly scaffolded projects from declaring colliding pins, and handle already-declared collisions without reporting the wrong checkout as an unreadable-pin finding. ✅
#275 Give operators an unambiguous way to verify colliding pins and avoid suggesting the shared variable in their skip or chain hints. ✅

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Getting Help

This was referenced Oct 12, 2026
brettheap pushed a commit that referenced this pull request Oct 12, 2026
…(), which both roots' bootstrap.py now import instead of defining twice (#391)

Why. SonarCloud failed PR #456 on duplication (14.7% on new code against
a 3% gate): spelled() and escape_unencodable_stdout(), with the two sets
spelled() reads, were written out once in each root's
scripts/bootstrap.py, and a test held the two copies identical. The
premise behind the copies, that a root cannot import anything of this
repository's, was false: every project and every family holder carries
scripts/repo_shape.py, the pinned shared library, and both bootstraps
already import Refusal, find_repo_root and load_yaml from it. Brett
Heap's decision (2026-10-12): move the two helpers into repo_shape.py
and have both bootstraps import them; no Sonar exclusion.

Where. A new section at the END of scripts/repo_shape.py, after die():
ESCAPED_CATEGORIES, ESCAPED_BIDI_CONTROLS, escape_unencodable_stdout()
and spelled(), copied from the bootstrap source byte for byte. Their
code is unchanged (the AST of each, docstrings aside, equals both old
copies); only the docstring sentences the move made untrue are reworded
("this file", "this script", "the same in the assembly root's
bootstrap.py and the family root's"). `import unicodedata` joins the
imports after `import sys`, and the module docstring's "WHAT THIS
MODULE OWNS" list gains one bullet after `Refusal`. Those three places
are clear of the open PRs that also edit this file (#394, #409, #416,
#453): each of them merges with this commit without a conflict in
repo_shape.py.

Both templates/*/scripts/bootstrap.py lose the two definitions, the two
sets and `import unicodedata`, and add the two names to their existing
`from repo_shape import` line (the family root's becomes the
parenthesised form). escape_unencodable_stdout() is still main's first
statement, and the module level is still only `sys.path.insert` and the
import. Against origin/main, each bootstrap now differs only in that
import line and the spelled() call sites.

Tests (tests/test_bootstrap_spelling.py). The test
test_the_two_roots_carry_the_same_function is replaced by an ast
check that each root's
`from repo_shape import` names both and that nothing in the file
defines or assigns either function or either set; one more test per
root asserts that the name its module exposes IS repo_shape's object.
The unit rows of spelled() (keep-raw, escape, the full code-point sweep,
the non-string values, the one-line check) and of
escape_unencodable_stdout() now run once against repo_shape itself
instead of once per root. The end-to-end rows run a real scaffolded
project and a real family holder, which carry scripts/repo_shape.py, so
they exercise the moved code where it ships; they and the bytecode
regression test are unchanged.

Lane: openreposhape-5 (openRepoShape-5)
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
brettheap added a commit that referenced this pull request Oct 12, 2026
…ncode and spells each value it prints, so `name: "a\ud83db"` or `日本` under `PYTHONIOENCODING=ascii` no longer ends `make bootstrap` in a traceback (#391) (#456)

`templates/assembly-root/scripts/bootstrap.py` `main` opened with `print(f"bootstrap: {name} ({root})")`, before any step ran, and `templates/family-root/scripts/bootstrap.py` with the same line (`:180`, with a literal dash in it).

- `name: "a\ud83db"` reads as a string holding a lone surrogate, which no UTF-8 stdout can write. `scripts/bootstrap.py` exited 1 with `UnicodeEncodeError`, `make bootstrap` exited 2, and `validate-manifest.py`, the validator that names the problem, was never reached.
- `日本` under `PYTHONIOENCODING=ascii` ended the same way.
- The family root's line holds a literal `—`, so under that stdout it raised for EVERY name (`InkRouter` included). The assembly root's own wording has the same dash in two lines and a middle dot in the register readout.
- A raw ESC or CR in a name is encodable on every stdout and reached the terminal as the control it is (`bootstrap: a^[b^Mc (...)`).

Both files are shape copies, digest-pinned in the project that holds them, and a project carries `scripts/repo_shape.py` and no `shape_materialize.py`, so neither can call #214's helper. Both already import `Refusal`, `find_repo_root` and `load_yaml` from that `repo_shape.py`.

`scripts/repo_shape.py`, the pinned shared library every project and every family holder carries beside its `bootstrap.py`, gains two functions and the two sets one of them reads (a new section at its end, `scripts/repo_shape.py:2524`). Both roots' `bootstrap.py` import the two functions on the `from repo_shape import` line they already had, and define neither:

- `escape_unencodable_stdout()` is the first statement of each root's `main`. A `strict` or `surrogateescape` stdout becomes `backslashreplace`, the handler stderr already has: what the stdout holds is written as it was, what it cannot hold as `\u65e5`. Any other handler is left alone and the encoding is never changed. It is `validate-pins.py`'s guard from #295 (`validate-pins.py:851`), which is inline there and cannot be imported.
- `spelled(value)` writes the escape Python spells (`\x1b`, `\r`, `\n`, `\u2028`, `\ud83d`, `\u202e`) for EXACTLY four kinds of character, chosen by Unicode category and not by `str.isprintable`:
  - the controls (Cc: C0, DEL and C1);
  - the surrogates (Cs);
  - the line and paragraph separators (Zl, Zp: U+2028 and U+2029);
  - the bidirectional controls: U+061C, U+200E, U+200F, U+202A to U+202E and U+2066 to U+2069.

  Every other character prints as it did before this change: the zero-width non-joiner (U+200C) a Persian name needs, the zero-width joiner (U+200D) of an emoji sequence, the ideographic space (U+3000) of `山田` U+3000 `太郎`, the no-break space (U+00A0), the soft hyphen (U+00AD), any other format, space or unassigned character, and a backslash. The four categories are fixed ranges, so the answer does not move with the interpreter's Unicode database; `unicodedata` is the standard library's.

Helper decision: `repo_shape.double_quoted` / `_escaped` (`scripts/repo_shape.py:347`, `:371`) was read first and still cannot serve: it quotes and escapes `"` and `\`, so a plain printable name would not stay byte-identical. The two new helpers now live beside it, in the same file, the one library both roots import from. `shape_materialize.escape_what_stdout_cannot_encode` is in no project; `shape_advisory.printable` flattens to `?` and is in no copy list.

Every print of a value the script read from the manifest, a register row or the disk is spelled:

- assembly root: the name and the root (first line); a leg's role, path and tracking branch in step (a); a register row's holder, act, objects, state and expiry, the register's path, and the reader's reason when it cannot be read.
- family root: the name and the root (first line), a member's project and directory name, `--members-make` (heading and failure line). The member's own command is still handed the RAW target.

A plain name prints exactly what it printed before: the new tests spell out the whole output of a plain project and a plain holder, and that golden also passes on the base. So does every valid name that holds one of the characters kept raw above (see the tests).

**Files.**

- `scripts/repo_shape.py`: `escape_unencodable_stdout()`, `spelled()`, `ESCAPED_CATEGORIES` and `ESCAPED_BIDI_CONTROLS`, in a new section after `die()`; `import unicodedata`; one bullet in the module docstring's "WHAT THIS MODULE OWNS".
- `templates/assembly-root/scripts/bootstrap.py` and `templates/family-root/scripts/bootstrap.py`: both names on the existing `from repo_shape import` line (the family root's becomes the parenthesised form); `escape_unencodable_stdout()` first in `main`; every print of a value read from the manifest, a register row or the disk goes through `spelled`. Against origin/main each differs in nothing else.
- `tests/test_bootstrap_spelling.py` (new).

`docs/cli.md` is unchanged: no `--help` text moved.

**Fix round 1 (review of 118c85a).** The first head's `spelled` wrote as an escape every character `str.isprintable` refuses. Independent review (its S1) showed that is wider than controls, surrogates and line separators: it also refuses every space but ASCII space, every format character and every unassigned code point, so a valid name that `validate-manifest.py` accepts and prints raw on the very next lines was escaped by this script's first line (a Persian name with its ZWNJ, an emoji sequence with its ZWJ, `山田` U+3000 `太郎`, a no-break space, a soft hyphen). The printed `git submodule update --init <path>` command was then wrong to paste for such a leg path, and what was escaped moved with the interpreter's Unicode database (Python 3.9 ships Unicode 13, 3.12 ships 15). The claim "prints byte for byte" was false for those names.

**The coordinator decided, and Brett may reverse it:** escape by category, not by `str.isprintable`, the four kinds listed above. Everything else prints raw, as on the base. The bidirectional controls stay escaped on purpose, so a name cannot reorder the text around it on a terminal. The alternative the review offered, and this does not take, is to keep `isprintable`, correct the claims, and pin ZWNJ and U+3000 as escaped by a test row.

The other round-1 changes: the lone-surrogate rows now assert `FINDING manifest-name` and no `Traceback` unconditionally, since #280 landed in #390 (cb7063f), and the `make bootstrap` row asserts there is no `Traceback` either; the docstrings, the test module's docstring and the unit rows say what is escaped and what is not. The branch has merged origin/main (53bee5b, which carries #390); the merge touched neither bootstrap file.

**Fix round 2 (CI and SonarCloud).**

- **CI** (2733c6a). The test module loaded each root's `bootstrap.py` through `importlib`, which wrote `templates/*/scripts/__pycache__/bootstrap.cpython-*.pyc`, and `tests/test_scaffold_leg_path_collisions.py`, which reads every file of the assembly template as UTF-8, then failed on it. `load()` now sets `sys.dont_write_bytecode` around the load, and a regression test asserts that loading either root, from the tree and from a copy in an empty directory, leaves no file behind.
- **SonarCloud** (d0aea3e). The quality gate failed on duplication, 14.7% on new code against 3%: `spelled()` and `escape_unencodable_stdout()`, with the two sets, were written out once in each root, and a test held the two copies identical. The premise for the copies, that a root cannot import anything of this repository's, was false: both bootstraps already import from `scripts/repo_shape.py`, which every project and every family holder carries. **Brett Heap decided** to move the two helpers into `repo_shape.py` and have both roots import them, with no Sonar exclusion. The code moved byte for byte (the AST of each function and set, docstrings aside, equals both old copies); only the docstring sentences the move made untrue are reworded. The new section, `import unicodedata` after `import sys`, and the docstring bullet after `Refusal` sit where none of the open pull requests that also edit `repo_shape.py` edits: #409, #453 and #394 each merge with this head with no conflict, in that file or any other (`git merge-tree --write-tree` against each branch's head, 2026-10-12). #416 landed as 580d7df without touching `repo_shape.py`.
- The branch merged origin/main ec8e09a (e4b0386) first; that merge touched none of this pull request's files. `git merge-tree --write-tree` of this head with current main is clean (2026-10-12).

**How it was tested.** `tests/test_bootstrap_spelling.py` (new, 205 tests at this head, local bare remotes, no `gh`). Answered in bytes, stdout decoded strictly in the encoding the run was given (stderr with `replace`), under `utf-8:strict`, `utf-8:surrogateescape`, `cp1252:surrogateescape`, `cp1252:strict`, `ascii:strict` and `utf-8:replace`:

- name rows in a real scaffolded project and a real family holder:
  - spelled: plain, lone surrogate, ESC and CR, `日本`, newline/tab/DEL, U+2028, the right-to-left override (U+202E) with the right-to-left mark (U+200F), an emoji, a quote and a backslash, two lone surrogates;
  - kept raw, as on the base: a no-break space (on all six stdouts, the cp1252 ones hold it), a Persian name with its ZWNJ, an emoji sequence with its ZWJ, `山田` U+3000 `太郎`, a soft hyphen, a zero-width space with a byte-order mark. For each, the first line is compared in BYTES with what the plain `print` it replaced wrote (assembly and family), and a full run with the validators shows the validator's own `manifest ok: <name>` line raw beside it;
- every other print above: a leg's role, path and tracking branch (and the four lines that name a branch, one with a remote-tracking ref elsewhere), a register row, a register's path and the reader's reason, the root's own directory name in both roots, a member row and `--members-make` (with `MAKE` the interpreter, so a member runs only if the RAW target reached it);
- the run reaches the validators: a lone-surrogate name prints `FINDING manifest-name`, `make bootstrap` exits 2 and `bootstrap FAILED: manifest (exit 1)`, with no `Traceback` and no frame in `bootstrap.py`;
- `spelled` and `escape_unencodable_stdout` directly, in `repo_shape` itself, once rather than once per root: every code point swept once against a set written from the specification (explicit ranges), which is itself checked against `unicodedata.category`; that each root's `from repo_shape import` names both and that neither root defines or assigns either function or either set (an `ast` check of the file); that the name each root's module exposes IS `repo_shape`'s object; that the reconfigure is `main`'s first statement; and that loading a root writes no bytecode under `templates/`.

The end-to-end rows run a real scaffolded project and a real family holder, and each carries `scripts/repo_shape.py`, so they run the moved code where it ships.

Results (`Python 3.12.3`, Linux; head d0aea3e = the move, on e4b0386 = the merge of origin/main ec8e09a):

| run | result |
|---|---|
| `test_bootstrap_spelling.py`, `test_scaffold_leg_path_collisions.py`, `test_stdout_encoding.py`, `test_template_quoted_values.py`, `test_template_values_single_pass.py`, `test_repo_hygiene.py`, `test_agents_md_codes.py` | 684 passed, 1 skipped (`tests/test_stdout_encoding.py:286`, Windows-only) |
| the five `test_yaml_*.py`, the six `test_update_shape*.py`, `test_scaffold_e2e.py`, `test_family.py`, `test_validate_family_unnamed_mounts.py`, `test_cli_reference.py`, `test_windows_paths.py` | 706 passed, 3 skipped (`tests/test_update_shape_add_symlink.py:831`, NTFS junctions) |
| mutation: `repo_shape.spelled` escapes nothing | 61 failed, 144 passed: 29 unit rows (every escape row, the code-point sweep, the non-string and one-line rows) and 32 end-to-end rows in a scaffolded project and a family holder (the name lines, a leg's role and path, a branch, a register row and a register's path, the root's directory, the member rows) |
| `test_bootstrap_spelling.py` again, the mutation reverted | 205 passed |

Earlier heads, not re-run on this one: on af26b19 the then 260-test file gave 197 failed, 63 passed against the base (cd1fc79) templates, 59 failed with both copies' `spelled` reverted to `str.isprintable`, and caught all 12 mutations of the category sets; reverting each hunk of the first round's fix, one at a time, still failed a new test (34 mutations, listed in the report); on 118c85a the existing bootstrap, scaffold, adopt, update-shape and doctor tests gave 496 passed, 1 skipped, and 305 passed. macOS and Windows have not run here; CI runs them on this head. Every new test reads and writes bytes and compares against `project.resolve()`.

What the rest of the run says (the lone-surrogate and `make bootstrap` rows assert it at this head): a lone-surrogate name prints `bootstrap: a\ud83db (<root>)`, reaches step (b), and ends

```
FINDING manifest-name: name is 'a\ud83db', which holds U+D83D, a lone surrogate: no UTF-8 file, commit message or console can hold it. ...
bootstrap FAILED: manifest (exit 1)
```

exit 1 (`make bootstrap` 2), with no `Traceback` on a pipe, a TTY or `make`.

**What is left out.**

- The validators' own stdout. `validate-manifest.py`'s `manifest ok: <name>` still prints through a stdout with no handler: a valid `日本` under `ascii` ends in ITS traceback (the issue's "Not in this issue"), and an ESC or CR name is accepted and the line writes the raw control.
- A manifest value that is passed to git rather than printed: `tracking_branch: "a\ud83db"` (or a leg's `branch:`) raises from `subprocess` inside step (a), before the validators; a NUL does too (`ValueError: embedded null byte`). Reproduced on origin/main 53bee5b. `validate-manifest.py` never reads either key, so it accepts the manifest (`manifest ok`, exit 0) and NO tool names the value. Not a `print`; follow-up below.
- stderr: `print(str(exc), file=sys.stderr)` (Refusal text built by `repo_shape`, multi-line, manifest text `repr`-escaped; stderr cannot raise) and the family's `FETCH INCOMPLETE` text (git's own words).
- `templates/family-root/scripts/siblings.py`, which carries the SAME first line twice (`:676` in `dispatch_all`, `:906` in `_run_placement`) with the same plain `print`, and prints member rows raw. `make siblings`, `make park` and `make resume` on `name: "a\ud83db"` still end in a `UnicodeEncodeError` traceback (reproduced on origin/main), and under `PYTHONIOENCODING=ascii` they end so for every name (the literal dash). It already imports from `repo_shape`, where both helpers now are, so they are two more names on its existing import line. Follow-up below.
- Behaviour that differs from the base, all deliberate:
  - a control, a surrogate, a line or paragraph separator or a bidirectional control in a value now prints as its escape where the base wrote it raw, so a Hebrew or Arabic name that holds an explicit U+200E, U+200F or U+061C prints `\u200f` for it;
  - a root path holding a byte that is not UTF-8 prints `\udcXX` where the root `bootstrap` shim's #214 handler wrote the raw byte back;
  - a name holding the four characters `\x1b` prints as one holding ESC does;
  - the wording's dash and middle dot print `\u2014` and `\xb7` on a stdout that cannot hold them, instead of raising.
- The digest: no digest of either bootstrap or of `repo_shape.py` is recorded in this repository. The scaffold, `family.py init` and adopt compute each `files:` row from the bytes they write, and `update-shape.py` compares upstream blobs at two commits. A project scaffolded from origin/main 580d7df, checked against this head (d0aea3e), reads `upstream-changed` for `scripts/bootstrap.py` and `scripts/repo_shape.py` and nothing else (assembly root: 2 changed, 9 unchanged; family holder: 2 changed, 8 unchanged). `apply` copies both and re-pins, the project's own validators say `11 copied shape file(s) match their digests` (the holder's, 10), each copy equals its upstream blob, and `scripts/bootstrap.py` runs. Run for real, local remotes only.
- Compatibility: a project that keeps a locally edited `scripts/repo_shape.py` (`check` reads it `both`, and `update-shape.py apply --accept-local scripts/repo_shape.py` keeps the project's bytes) while taking the new `bootstrap.py` meets an `ImportError` the next time it bootstraps: `scripts/bootstrap.py` ends in `cannot import name 'escape_unencodable_stdout' from 'repo_shape'`, exit 1. Following `check`'s own instruction avoids it: `check` says to merge upstream's bytes into the edited file by hand, commit it, and only then `apply --accept-local`, and a merge that takes the new section brings both names. A project that skips the merge gets the error and nothing reports the break after `apply`: its validators still pass, because they import neither name; `check` then reads everything unchanged; and the project's `validate.yml` never runs `bootstrap.py`, so its CI stays green. The first command to fail is the one run after `git clone`. Guarding it is an item on #458's checklist (#458 (comment)): `apply` would refuse a kept `--accept-local` copy that lacks a name another copied shape file imports from it. It is the same coupling as the names the bootstraps already import from that file. Run for real on a project scaffolded from 580d7df.

Follow-ups found by lane 5's review of this branch, each reproduced on origin/main and filed separately:
- `siblings.py`'s two first-line prints (and its member rows): `make siblings`, `make park` and `make resume` on a lone-surrogate `family.yaml` name end in a `UnicodeEncodeError` traceback (#454).
- A lone surrogate or a NUL in `tracking_branch` (or a leg's `branch:`) ends `make bootstrap` in a subprocess traceback in step (a), and `validate-manifest.py` accepts the manifest (#455).
- #454 and #455 (open, off the milestone) and the two #459 checklist items moved from #463 and #464 can import `spelled` and `escape_unencodable_stdout` from `repo_shape.py`, wherever they print a value.

Reviewed adversarially at 118c85a (CHANGES NEEDED: 0 blockers, 2 should-fixes, 2 nits); fix round 1 (af26b19) was re-verified APPROVE WITH NITS (0/0/2). Fix round 2 stopped the test module writing bytecode into `templates/` (2733c6a) and moved the two helpers into `scripts/repo_shape.py` on Brett Heap's decision (d0aea3e); its independent re-verification read APPROVE WITH NITS (0/0/3), all three about this text and settled here. CI is green on Linux, macOS and Windows, with SonarCloud passing, at d0aea3e (main ec8e09a merged in).

Closes #391

Lane: openreposhape-5 (openRepoShape-5)
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

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Sourcery assessment

Approved.

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@brettheap
brettheap merged commit 9736424 into main Oct 13, 2026
5 checks passed
@brettheap
brettheap deleted the fix/pin-source-env-collisions branch October 13, 2026 01:42
brettheap pushed a commit that referenced this pull request Oct 13, 2026
…409) into fix/adopt-default-branch-and-pr-tail

Conflict: adopt-project.py module docstring, the check paragraph; both clauses kept (the tracking branch, then the split branch).

Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>
brettheap pushed a commit that referenced this pull request Oct 13, 2026
#338)

scripts/repo_shape.py was the one file that conflicted, in four hunks where
this branch's `tried` and `with_reasons` meet #409's `env_shared`; each takes
both sides, as the review of 2ac911c resolved it:
- the `resolve_link_source` signature is `default_source=None, env_shared:
  bool = False, *, tried: list | None = None` (`env_shared` stays positional,
  because #409's callers pass it positionally, and `tried` stays keyword-only);
- its docstring keeps this branch's two #338 paragraphs, then #409's
  `env_shared` paragraph (#275);
- the `link_pins_from_trees` docstring keeps this branch's three paragraphs,
  then #409's, and the body opens with `found`, this branch's `unreadable`, and
  #409's `links` and `shared`;
- the call is `resolve_link_source(name, root, keyed_sources, default_source,
  pin_product_key(name) in shared, tried=asked)`, then `tried[name] = asked`.
A variable two links share is never a candidate, so `tried` holds no env entry
for it and nothing is reported, which is #409's intent kept whole. `docs/cli.md`
and scaffold-project.py merged on their own; #409's reached-warning edit in
`_chain_link_findings` and this branch's reached branch sit in different lines.

Lane: openreposhape-5 (openRepoShape-5)
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
brettheap pushed a commit that referenced this pull request Oct 13, 2026
…pin-file: #409's four files take main's blobs, which are #409's final head's, `scaffold-project.py` keeps the pin code this branch moved out and gains main's own changes, and #445's `try` in `_commit_the_split` carries this branch's `neutral_pins=` argument beside #394's `append`

#409 squash-landed as 9736424 (its final head b70a07d). This branch held
#409 at 6494714, and after it #409 only merged main five times, none with
a hand edit (`git show --remerge-diff` empty for bac7dee, 480c348,
efb7322, 5bdcae3 and b70a07d). `git diff b70a07d 9736424 -- <file>` is
empty for each file #409 touched: scaffold-project.py, scripts/repo_shape.py,
templates/assembly-root/scripts/validate-pins.py and
tests/test_pin_source_env_collisions.py.

Conflicts, four files, one hunk each:

- scaffold-project.py. #409's squash re-adds `PIN_COLLISION_REMEDIATION`,
  `PIN_VARIABLE_REMEDIATION`, `_refuse_colliding_pins`,
  `_colliding_pin_variables` and `_pin_collision_remediation`, which this
  branch moved to scripts/shape_materialize.py (#273). The hunk takes this
  branch's side, empty, and #409's auto-merged import of
  `PIN_SOURCE_ENV_PREFIX, pin_source_env_collisions` (and its two comment
  lines), which nothing in the file uses any more, is dropped. Not the whole
  file `--ours`: main changed scaffold-project.py beyond #409 since this
  branch's last merge (6c2a371's `--tracking-branch` check, a73b4e9's
  `RULESET_HINT`), and those lines stay. The result equals the file
  `git merge-tree` gives for this branch with main before the squash
  (518010b), blob fbe7215, and its diff from this branch's tested file has
  the patch-id of main's own 3ef059c..518010b change to the file.
- templates/assembly-root/scripts/validate-pins.py. Main's side, which is
  #409's final blob (5f83eb7) with main's #359 workflow reader. This branch
  had no change of its own to the file beyond #409 at 6494714.
- adopt-project.py, `_commit_the_split`. #445 wraps the function in its
  late-failure `try` with `step` names, and #394 builds an `append` with the
  plan's submodule record. This branch's only edits there were a comment and
  `neutral_pins=_recorded_pins(plan)` on the materializer call. Resolved
  with main's side, and the comment and the argument on main's call inside
  the `try`: `append=append, neutral_pins=_recorded_pins(plan)`.
- docs/cli.md, generated: regenerated with scripts/render-cli-reference.py
  over the resolved tree (`--check` ok). It differs from main's only in
  `adopt-project.py plan`'s `--pin`, `--pin-owner` and `--pin-source` help.

scripts/repo_shape.py and tests/test_pin_source_env_collisions.py
auto-merged to main's blobs (82346be, 5220787). pyflakes reports the same
four warnings on the merged adopt-project.py, scaffold-project.py and
scripts/shape_materialize.py as before the merge.

#445's tests/test_adopt_late_failure.py hands `_commit_the_split` a
`SplitPlan`, a `dict` that adds `entries`, as its plan, which `_read_pins`
cannot read yet; the next commit makes it read one.

Lane: openreposhape-5 (openRepoShape-5)
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
brettheap added a commit that referenced this pull request Oct 13, 2026
… is `PRODUCT=PATH` only when its key names a chain link, and a link source that cannot be entered is a WARNING with the system's reason, not a traceback (#338) (#453)

**What was wrong.**

Two faults, one in the parser and one in the lookup.

- **The parser.** `_link_sources_from_args` split every `--link-source` value at its first `=`. A link tree under a directory named `a=b`, passed bare, became a source keyed to a link `a` that no chain names. Nothing asked for it, so the link stayed `declared-unverified`, exit 0. The WARNING then offered `--link-source openXdox=<path>` to the person who had passed exactly that. A mistyped key failed the same silent way.
- **The lookup.** `repo_shape.link_manifest_path` asked `Path.is_dir()` and then `is_file()`. Before Python 3.14 those swallow only ENOENT, ENOTDIR, EBADF and ELOOP. So each of these ended the naming gate in a traceback, exit 1:
  - a keyed source under a parent this user cannot enter;
  - `SHAPE_PIN_SOURCE_<LINK>` pointing there;
  - a checkout `../openXdox` at mode 000, which every `--project` run asks for;
  - a 300-character name.

**What changed.**

**How a value is read** (`LinkSources` in `scripts/validate-repository-naming.py`). This mirrors #312's `PinSources`, with a chain link where that file has a declared pin:
- The text before the first `=` is a LINK only when it casefolds to a link of a chain this run reads. Those are the entries of `--referent-chain`, and of each leg's `naming.referent_chain:` under `--project`. Both are read before any leg is classified.
- The keyed reading wins even over a directory spelled like the whole value. `./` reads that directory.
- Any other value is a bare PATH, taken whole.

**What a lookup says** (`scripts/repo_shape.py`):
- `link_manifest_lookup` asks `stat()` inside a guard, as `_digest_from_source` does in #312. It returns the system's reason when a source cannot answer, or says which of four plain cases it is (`no such file or directory`, `it holds no project.yaml`, `its project.yaml is not a file`, `it is neither a directory nor a file`), and it never raises. It replaces `link_manifest_path`, which is gone: nothing calls it. `link_declarations` gives the reason a manifest could not be read, and `declared_neutral_pins`, which it left with no caller, is removed (fix round 1).
- `resolve_link_source` and `link_pins_from_trees` take a keyword-only `tried`. It records each source asked, in order, with its reason. Nothing in `repo_shape` prints.
- `link_pins_from_trees` also takes a keyword-only `with_reasons` (fix round 2). Asked, it returns a `LinkPins`, a dict equal to the plain mapping that also remembers why a tree it reached could not be read. Only the scaffold asks.

**What the validator prints** (stderr, after each name's WARNINGs):
- `WARNING link-source-unreadable: <path> (<how>) could not answer for <link>: <reason>`. This covers a `--link-source` asked for a link that holds a pin, a `SHAPE_PIN_SOURCE_<LINK>` likewise, and a checkout beside the project that exists and still cannot answer. A keyed value that also names a directory gets a second line saying how to ask for that directory with `./`. A bare value holding `=` says it was read as a PATH.
- `NOTE --link-source <typed>: not used — <why>.` for a value no such link asked for. The why is one of five: a later value replaced it; no name reads that link's own declaration (a keyed value); no name records a chain at all; no name reads any chain link's own declaration (a bare value, where chains exist and none is read); or every link that is read had a more specific source.
- Three kinds of source are never named: a variable or a checkout asked only for a chain's LAST link (no one ever reads that link's own declaration); a variable or a checkout for a chain no classification reads (fix round 1: a spec leg's chain, a name with no referent, a chain whose shape fails; a `--link-source` value for such a chain is the NOTE); and a checkout that is absent or holds no manifest.
- `--quiet` drops both, with the WARNINGs. So `make bootstrap` and the doctor's `naming` row print nothing new.

`--help`, the module docstring and `docs/cli.md` (regenerated) say all of this.

**Fix round 1 (lane 5's review of 40762ca: 0 blockers, 2 should, 4 nits).**

Second commit, 4b21263. Each review finding, in order:

- **A link manifest whose `neutral_product_pins:` is not a list of names is a tree that cannot answer** (SHOULD-1). `link_declarations` iterated `data.get(key) or []` as it stood, against the `link_pins_from_trees` docstring this change wrote ("nothing a source does raises out of here"). `5` ended the naming gate, the scaffold and the project's `validate-manifest.py` in `TypeError: 'int' object is not iterable`. A scalar `openDox` was read as the characters `D`, `e`, `n`, `o`, `p`, `x`, so the chain broke, and under `--project` that is a FINDING. A mapping was read as its keys, so `openDox: yes` DECLARED `openDox`. Each is now `(None, why)`, as `not a mapping` is: declared-unverified, with the reason named ("`neutral_product_pins` is not a list", "holds an entry that is not text"). An absent or null value, an empty list, and a blank entry (`null`, `''`) in a list, declare nothing, as ever. The fix is in the shared function, so the scaffold and `validate-manifest.py` are reached too.
  **Three behaviours change on purpose here, and the tests of fix round 2 pin each:**
  - **A falsy value is no longer an empty list.** `neutral_product_pins: 0`, `false` or `''` was read as no pin at all (`or []`), so a chain through the tree was BROKEN, and under `--project` that is a FINDING. It is now a tree that cannot answer: the link is declared-unverified, a WARNING, exit 0.
  - **An entry that is not text is no longer read as text.** `[openInk, 0]` and `[openInk, false]` dropped the entry as a blank, and `[openInk, true]` read it as the text `True`, so a chain through the list VERIFIED. Each is now declared-unverified, with a WARNING saying the list "holds an entry that is not text". That is stricter than the link tree's own `validate-manifest.py`, which takes `str(pin)` of an entry (`_declared_pins`, `templates/assembly-root/scripts/validate-manifest.py:85`): a chain is better left unverified than verified through a name nobody wrote.
  - **The scaffold no longer refuses `chain-not-declared` over a pins value that is a scalar.** With `--pin-source` a tree whose `neutral_product_pins:` is the scalar `openInk`, the scaffold used to refuse (`REFUSED chain-not-declared: ... openXdox declares I, e, k, n, o, p, not openInk`, exit 2, from the characters). It is now the declared-unverified WARNING and the scaffold goes on, exit 0, which is its documented rule for a tree that cannot answer: "a warning, never a refusal, because the check is offline". The warning says the tree was reached and could not be read (fix round 2, below).
- **The reach wording is corrected** (SHOULD-2): "Who else this reaches" below, and the docstring of the test that made the claim. What stops crashing is the naming and manifest steps. `make validate`, `validate.yml` and `make bootstrap` still end in a traceback on the sibling row before Python 3.14, at a file this change does not touch (below). On 3.14 the sibling is passed over without a word there instead, which is #430.
- **The mutation gaps** (nit). Six of the review's ten mutations survived. Five now die, each by a new test: a `project.yaml` that is a directory; a device or a FIFO as the source; the order A, B, A; a value holding `=` with no chain at all; and every failure of `SHAPE_PIN_SOURCE_<LINK>` for a link that holds a pin (a path that is not there, a directory with no manifest, a file that is no manifest), not only a permission. The sixth, the `typed in self.used` test in `unread_lines`, could not be killed because it was dead: a value is read as one link's keyed source or is the one bare PATH, so every lookup asks it of the same path and it is used or unread, never both. That was asserted over 293 tests and the test is removed.
- **A chain no classification reads** (nit). `classify` consults a link's own declaration only for a name that claims a referent, with a recorded chain whose shape holds. For any other chain (one recorded on a spec leg; one on a name with no `open<Product>` to reach; one that does not begin at a held pin or does not end at a referent of the name) a source was still asked, so a path that was not there was reported as `link-source-unreadable` and a good tree was counted used, each for a question nobody put. `NamingPolicy.reads_link_declarations` now says when `resolve_referent` reads a chain, and `LinkSources.link_pins` asks it first: such a chain asks nothing, and a value for it is the NOTE that no name reads that link's declaration. A test runs `resolve_referent` with a mapping that records whether it was read, over every way a chain is and is not, and holds the new method to it.
- **Dead code and stale sentences** (nit). `declared_neutral_pins` is removed: `git grep` over the tree, every pushed branch and every sibling worktree finds no caller. `link_manifest_lookup`'s docstring no longer says "replaces" over a name that is gone. This description no longer says `tests/test_naming_policy.py` takes `SEARCH_DENIED` from #312: it defines a mark of its own, with the same condition and its own reason text.

**Fix round 2 (lane 5's re-review of 4b21263: 0 blockers, 0 should, 3 nits).**

Third commit, 2ac911c. Each finding, in order:

- **The three behaviours the body did not state are stated and tested** (nit 1). Round 1's not-a-list fix changed three behaviours on purpose, each listed under SHOULD-1 above, and the re-review found two of them had no test. R1 (`if declared is None` read as `if not declared`, which makes `0`, `false` and `''` declare nothing again) and R2 (`if pin is None or pin == ""` read as `if not pin`, which drops a `0` or `false` entry as a blank) both passed all 210 cases of `tests/test_naming_policy.py` at 4b21263. Six rows join `NOT_A_LIST_OF_NAMES`, which runs at the CLI and in process: `0`, `false` and `''` as the value, and `0`, `false` and `true` among the names. R1 now fails 9 cases and R2 fails 6.
- **The scaffold's warning is true for a tree it reached** (nit 1, the third behaviour). Over a `--pin-source` whose `neutral_product_pins:` is not a list, round 1 turned the `chain-not-declared` refusal into a declared-unverified WARNING that says the tree "is not reachable here (a sibling checkout, SHAPE_PIN_SOURCE_<LINK>, or --link-source <LINK>=<path> would let it be read)". `--pin-source` did reach the tree, and only its declaration could not be read, so that blamed a path that was right. Now `link_pins_from_trees` takes a keyword-only `with_reasons`; asked, it returns a `LinkPins`, a dict equal to the plain mapping that also keeps `unreadable`, `{link: why}` for each link whose source answered and whose manifest could not be read. `_chain_link_findings` words such a link "which was reached but could not be read as a declaration (<why>)", in a branch of its own, and only the scaffold asks. The new text is asserted for each of the eleven not-a-list rows, with `scaffold-project.py --dry-run` run as a subprocess.
  - **Every other path's text is the bytes it was.** The sentence for a link no source reached is the same code in the same lines, and four tests hold it: the generic warning for a plain mapping, for an empty `LinkPins` and for an absent tree; the scaffold's own old warning for a clone that holds no `project.yaml`; the naming validator's two lines (its warning, and the `link-source-unreadable` line that names the reason); and `validate-manifest.py`'s. The naming validator and `validate-manifest.py` do not ask for reasons, so they print what they printed.
  - **One more scaffold path changes with it, on purpose.** A tree the scaffold reached and could not read as a declaration for any other reason (a manifest that does not parse, or is not a mapping) used to say "not reachable here" too, and was no truer. It now says what it is, with the system's reason, and a test for each of the two (a manifest that is not a mapping, one that does not parse) holds it, at the scaffold's command line and in process: narrowing the wording to the not-a-list reasons fails both.
  - `_declaration` still returns its four values, so nothing else in `scaffold-project.py` moved.
- **A qualified chain link in the spy test** (nit 2). `_chain_read_cases` had no case whose chain link is qualified, so `reads_link_declarations` could take the chain as typed and not through `_chain_links` (R3) and pass every test. With `--referent-chain testorg/openXdox,openDox` that turns a verified chain into a declared-unverified one. `("codexDox", {"openXdox"}, ("testorg/openXdox", "openDox"), True)` is a case now, and R3 fails it.
- **The description** (nit 3): the ten corrections of the re-review are applied (the reason a lookup returns, the fifth NOTE reason, the third kind of silent source, the SHOULD-1 bullet, "before Python 3.14", the `validate-pins.py` bullet, the 3.14.7 rows, the merge-tree section, the filed numbers, and the project's own `validate-manifest.py`).

The mutation proofs: all three survivors were reproduced first at 4b21263 (210 passed each) and each dies at 2ac911c. Six mutations of the new code each die too: the warning ignoring the reasons (12 cases fail), the lookup recording none (12), the scaffold not asking (11), `with_reasons` on by default (3), an absent tree called reached (3), and the reached sentence used for a tree nothing reached (17).

**Where it departs from #312, and why.**

- **An explicit source that cannot answer stays a WARNING, exit 0.** #312 made an unreadable `--pin-source` a finding. Three reasons for the difference:
  - Exit 1 here means "a name is wrong", and this module has always said an unread link tree is a warning.
  - `SHAPE_PIN_SOURCE_<PRODUCT>` also answers `validate-pins.py`'s digest question, from a checkout that need not hold a manifest.
  - The lookup falls through to the next source, which may still verify the link.
- **The fall-through is kept**, as it always was. With `--pin-source`, a keyed value is final.
- **The lines go to stderr, spelled `WARNING`/`NOTE` as this file spells them.** #312's notes are `  note` lines on stdout, where that file's report lives.

**Who else this reaches.**

The guard is in `repo_shape.py`, so the same `link_pins_from_trees` lookup stops crashing for these callers too:
- **The project's own `validate-manifest.py`.** It reaches the lookup through `SHAPE_PIN_SOURCE_<LINK>` or a sibling checkout, and now gives its usual declared-unverified WARNING instead of the traceback.
- **`scaffold-project.py --referent-chain`.** A `SHAPE_PIN_SOURCE_<LINK>` under a locked parent no longer kills the plan, and `--pin-source` verifies the link.

Neither of these prints the reason a source could not be entered; the scaffold says it only for a tree it reached and could not read (fix round 2, above). A `--pin-source` the scaffold cannot enter is still a traceback: that is #339 (`pin_digest_from_source`), and this PR does not touch it.

**What this does not reach, and what the doctor says.**
- **The project's gates still end in a traceback on the sibling row.** The NAMING and MANIFEST steps of `make validate`, `validate.yml` and `make bootstrap` stop crashing for a checkout `../openXdox` at mode 000. Those targets also run `validate-pins.py`, whose `resolve_neutral_pin_source` asks `(sibling / ".git").exists()` with no guard (`templates/assembly-root/scripts/validate-pins.py:463` on main), so before 3.14 a sibling at mode 000 still ends them in a `PermissionError`. That file is #312's, and `fix/pin-source-env-collisions` (PR #409, since landed), `fix/adopt-pin-writes-pin-file` and open PRs #343 and #419 touched it when this was written, so this PR does not edit it. The same line is listed for Python 3.14 by #430 (lane 2), where the helper that would cure both halves is asked for; the pre-3.14 traceback reproduction is added there as a comment, not filed apart. A `SHAPE_PIN_SOURCE_<LINK>` under a locked parent is different: `validate-pins.py` makes that a `neutral-pin-source-unreadable` FINDING (#312), and that stays.
- **The doctor's `naming` row** runs the STANDARD's copy of the validator, so it stops crashing at once. **Its `manifest` row** runs the project's OWN `validate-manifest.py` on the project's own `repo_shape.py`, so it changes only once the project has applied this change. Over an existing project the doctor says `INVALID (manifest, pins)` until `update-shape.py apply` lands the two `upstream-changed` rows below.
- **The verdict.** For `SHAPE_PIN_SOURCE_<LINK>` under a locked parent, on a project that carries these copies, `INVALID (naming, manifest, pins)` becomes `INVALID (pins)`, and `pins` is #312's finding for that locked variable, which is right. For a sibling at mode 000 the `pins` that remains is the traceback above, not a finding.

The two copied scripts this change edits (`scripts/repo_shape.py` and `scripts/validate-repository-naming.py`) are copied into every project and pinned there. A project takes the change through `update-shape.py` (two `upstream-changed` rows), and a family holder takes the `repo_shape.py` row. Neither file has a second copy in this repository.

**Evidence.**

- **Issue rows, main ab623dd** (`repro338.sh`, a `gh` stub first on PATH). Under 3.10.21 and 3.12.3, rows 4-7 (keyed under a mode-000 parent, `SHAPE_PIN_SOURCE_OPENXDOX` there, a sibling at mode 000, a 300-character name) are a traceback, exit 1. Rows 2-3 (`a=b`, the typo) are a silent declared-unverified, exit 0. Under 3.14.7 row 1 verifies, and rows 2-7 are the silent declared-unverified WARNING, exit 0.
- **Issue rows, this PR.** Under 3.10.21, 3.11.16, 3.12.3, 3.12.14, 3.13.15, 3.14.7 and 3.15.0rc2 (first commit), all 7 rows exit 0 with no traceback, and the output is byte-identical across versions. `a=b` verifies. The other five rows each name their source with its reason. Re-run on the fix-round head, 4b21263, under 3.10.21, 3.12.3 and 3.14.7: byte-identical to the first commit's run. Re-run on the fix-round-2 head, 2ac911c, under the same three: all 7 rows exit 0 with no traceback, the output is byte-identical across the three versions, and it is identical to the re-review's runs of the previous head over main.
- **Reach on main.** Main gives a `PermissionError` traceback, exit 1, for `scaffold --dry-run`, the project's `validate-manifest.py`, `validate-repository-naming.py --project` and its `--quiet` form, each with `SHAPE_PIN_SOURCE_OPENXDOX` under a locked parent. This PR gives exit 0 for all four. `validate-pins.py` on the sibling row is the exception said above.
- **New tests.** 17 cases (11 functions) in the first commit; 16 fail on ab623dd. The fix round adds 31 cases in `tests/test_naming_policy.py`, and 17 of them fail on 40762ca: the five shapes of pins that are not a list (each at the CLI, in-process and, for the scalar, under `--project`), and the chains nobody reads. The other 14 guard what a mutation could break (below) or the side the fix must not move (an absent, null or blank pin list still answers).
- **Targeted run on 4b21263**, files `test_naming_policy`, `test_manifest_validator`, `test_scaffold_referent_chain_links`, `test_cli_reference`, `test_repo_hygiene`, `test_neutral_pin_validator`, `test_scaffold_e2e`, `test_shape_doctor`, `test_git_output_decoding` and `test_pin_validator`: **765 passed, 3 skipped**. The 3 skips are the PowerShell-only rows. (40762ca: 734 passed, 3 skipped.) `render-cli-reference.py --check` is ok.
- **Mutation probes, first commit.** Reverting the stat guard, the parse, keyed-over-directory, the NOTE lines, the chain's-end restriction, the sibling-absence filter, the manifest reason, the `--quiet` drop, the "read as a PATH" sentence, the `./` line, the project-chain read, the WARNING lines or the env reporting each fails at least one new test.
- **Targeted runs on 2ac911c (fix round 2).** Under 3.12.3, `test_naming_policy` (238 cases: 210 and 28 new), `test_cli_reference`, `test_manifest_validator`, `test_scaffold_referent_chain_links`, `test_repo_hygiene` and `test_setup_project_py`: **468 passed**; and `test_scaffold_e2e`, `test_scaffold_pin_and_reuse`, `test_scaffold_leg_path_collisions`, `test_scaffold_pin_collisions`, `test_neutral_pin_validator`, `test_git_output_decoding` and `test_pin_validator`: **312 passed**. Under 3.10.21 and under 3.14.7, `test_naming_policy`, `test_manifest_validator` and `test_scaffold_referent_chain_links`: **321 passed** each. `render-cli-reference.py --check` is ok, and `ast.parse(feature_version=(3, 9))` passes on the three changed files.
- **Mutation probes, fix round.** The review's ten, re-run on 4b21263: MW1, MW2, MW3, MW5 and MW11 now die (they survived), and MW4, MW7, MW12 and MW13 still die; MW6 is the dead test, removed. (Fix round 2 kills the three the re-review found, R1 to R3, and six more: see above.) Nine more for the new code (the list check, the entry check, the null and blank tolerances, `reads_link_declarations` always true, without the shape check, without the held pins, and the validator ignoring it): eight die. The ninth, `reads_link_declarations` ignoring whether the name has a referent, survives as an equivalent mutant: with no referent `_chain_shape_problem`'s last question always reports a problem, so the explicit early return is redundant, and is kept because `resolve_referent` has the same first line. The spy test holds the two together.
- **Windows.** The mode-000 rows skip on Windows and as root, using a `SEARCH_DENIED` mark this file defines, with the same condition as #312's. The new FIFO and `/dev/null` rows skip where those do not exist. `a=b` and the 300-character name run everywhere. On Windows the long-name row asserts the line, not POSIX's reason. None of it had been run on Windows or macOS when this was written; the last paragraph gives the CI result.

**Merge-tree.**

Recomputed at 19:04Z with `git merge-tree --write-tree` of 2ac911c against `origin/main` as it was then, 53bee5b, and against every one of the other 37 pushed branches that touches a file this PR changes (a scan of each head against its merge-base with main):
- **Clean:** origin/main 53bee5b (it carries #314 and #390); #394 `fix/adopt-record-submodule-placement` 563ea16 (`scripts/repo_shape.py` and `validate-manifest.py`) and #406 `fix/validate-family-unnamed-mounts` 369af2e (`scripts/repo_shape.py`); #397 abb27e6, #400 7062a47, #401 409f10b, #416 7cca975, #452 e2df9a8 and #395 1ef3310 (`docs/cli.md`); #355 6fdbe3d, #373 741cbf2 and #395 (`scaffold-project.py`).
- **Conflict, four hunks each, all in `scripts/repo_shape.py`:** `fix/pin-source-env-collisions` (PR #409) 6494714, and `fix/adopt-pin-writes-pin-file` 421e4e5 (no PR). Both also touch `scaffold-project.py`, and that merges clean with this PR's one edit there. Fix round 2's new hunks merge with neither: #409's change to the "not reachable here" sentence (the `offered` text, when a variable is shared) and the reached branch sit in different lines of `_chain_link_findings`. The four hunks, each taking both sides:
  1. the `resolve_link_source` signature: `default_source=None, env_shared: bool = False, *, tried: list | None = None`;
  2. its docstring: both paragraphs;
  3. the `link_pins_from_trees` docstring and the lines after it: both paragraphs, then `found`, this PR's `unreadable` and #409's `links` and `shared`;
  4. the call: `resolve_link_source(name, root, keyed_sources, default_source, pin_product_key(name) in shared, tried=asked)` (the same spelling on both branches), followed by `if tried is not None: tried[name] = asked`.

  Resolved that way in a throwaway and committed there, the merge with 6494714 passed **496 tests** (`test_naming_policy`, `test_pin_source_env_collisions`, `test_neutral_pin_validator`, `test_scaffold_referent_chain_links`, `test_manifest_validator`, `test_cli_reference`), and the merge with 421e4e5 passed **559 tests** (the same files and `test_pin_source_unreadable`). `render-cli-reference.py --check` is ok on both, pyflakes is clean, and the grammar parses as 3.9's. Neither branch carried the resolution when this was measured. #409 has since landed, and the merge of main into this branch (the last paragraph) takes those four hunks both ways. The earlier counts (468 and 434 from the first fix round, 430 from the re-review) are those runs' own, at their heads.

**Left out.**

Each of these was found by lane 5's reviews of this change, and each is filed or folded:
- **A bare `--link-source` answers for every link with no more specific source** (#441). In a chain of three or more links, one bare tree is read as two links' declarations, and a chain that holds is reported broken, a FINDING for a name with no direct pin on its referent. Pre-existing, the same on main; `validate-pins.py`'s `--pin-source` has the same documented rule and was not examined.
- **An empty path after a key (`--link-source openXdox=`) is `Path("")`, the current directory** (#442). Run from a project root, the project's own `project.yaml` is read as the link's declaration. Pre-existing; `validate-pins.py`'s `--pin-source openXdox=` has the same shape (there a finding naming `.`).
- **`validate-pins.py`'s `(sibling / ".git").exists()` is unguarded** (the sibling row above), folded into lane 2's #430, which already covers the Python 3.14 half: the pre-3.14 traceback and its reproduction are added there as a comment. #312's file.
- **The project's OWN manifest** with `neutral_product_pins: 5` ends in a `TypeError` in two gates before either can say anything about it (#443): `_pins_from_project` in the naming gate (`scripts/validate-repository-naming.py:302` on main), and `_declared_pins` in the project's own `validate-manifest.py` (`templates/assembly-root/scripts/validate-manifest.py:85`), which ends it before its own `manifest-neutral-product-pins` finding (`_neutral_product_pins_type_finding`, `:524` on main) can print. Reproduced on 3ef059c. That is the project's own declaration, read by the project's own gates, and not a link source, so it is outside this change; "read by the project's own gates" covers two crashing gates.

Also not done here:
- **Python 3.9 (the floor) was not run** because it is not installed here. The grammar of the three changed files was checked with `ast.parse(feature_version=(3, 9))`. Windows and macOS were not run here; CI ran them (the last paragraph).

Reviewed adversarially at 40762ca, the branch's first commit (CHANGES NEEDED: 0 blockers, 2 should-fixes, 4 nits). The head stopped every crash in the issue's table, and the should-fixes were a docstring claim the code did not keep for a `neutral_product_pins:` that is not a list, and reach claims that overstated what the project's gate does on the sibling row. Fix round 1 (4b21263) resolved every finding, and the re-review of 4b21263 read APPROVE WITH NITS (0 blockers, 0 should-fixes, 3 nits: three behaviour changes this description had not stated, two of them untested; a spy-test case for a qualified chain link; and description corrections). Fix round 2 (2ac911c) resolved those three, and its re-verification of 2ac911c read APPROVE WITH NITS (0 blockers, 0 should-fixes, 2 nits: no test of the scaffold's wider wording for a manifest that is not a mapping or does not parse, now pinned by two tests that each fail when the wording is narrowed, and a cross-reference in this description that pointed the wrong way, now corrected). Main (9736424, #409's squash) was merged into the branch as ced8fac. `scripts/repo_shape.py` conflicted in four hunks; each takes both sides, as the review of 2ac911c resolved it: `resolve_link_source(..., default_source=None, env_shared: bool = False, *, tried=None)`, both docstrings kept, `link_pins_from_trees` opening with `found`, `unreadable`, `links` and `shared`, and the call passing `pin_product_key(name) in shared` with `tried=asked`. Nothing else conflicted. After the merge, `tests/test_pin_source_env_collisions.py` and the targeted set passed (667 and 312), and `render-cli-reference.py --check` printed `[ok]`. CI is green on Linux, macOS and Windows, with SonarCloud passing, at 938a131 (main 48585e6 merged in). Its merge with main 994be39 passed the targeted set (the naming, manifest, scaffold, pin and setup test files): 983 passed.

Closes #338

Lane: openreposhape-5 (openRepoShape-5)
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
brettheap added a commit that referenced this pull request Oct 13, 2026
… writes its pin file as the scaffold does, so an adopted root passes `validate-pins.py` (#273); a `--pin-source` that cannot answer is `pin-source-unreadable` (#339) (#508)

**Brought up to date after #409 squash-landed** by merging origin/main (9736424, #409's squash) as f9ed46f. Its `scaffold-project.py` conflict was resolved to this branch's side once `git diff b70a07d 9736424 -- scaffold-project.py` (#409's final head against its squash) came out empty. So the file is the one tested on this branch plus main's own later changes to it, and holds nothing of #409's; details below.

This branch carries #275's adopt half. It was built on `fix/pin-source-env-collisions`, PR #409 (#275's scaffold half and its fix round), merged at 6494714 as 583f647, over the earlier 5690235 (34dbd86). After 6494714, #409 only merged main, five times, up to its final head b70a07d, and none of those merges has a hand edit (`git show --remerge-diff` is empty for each). Adopt's refusal of two products that share a source variable goes through #409's function, so this branch lands after #409. It was never rebased.

`git diff b70a07d 9736424` is empty for each file #409 touched: `scaffold-project.py`, `scripts/repo_shape.py`, `templates/assembly-root/scripts/validate-pins.py` and `tests/test_pin_source_env_collisions.py`. What f9ed46f resolves, four files with one hunk each:
- **`scaffold-project.py`.**
  - The conflict hunk is main's block from `PIN_COLLISION_REMEDIATION` through `_pin_collision_remediation`, which #409's squash edits: it adds `PIN_VARIABLE_REMEDIATION`, `_colliding_pin_variables` and `_pin_collision_remediation` and changes `_refuse_colliding_pins`. This branch moved all of that to `scripts/shape_materialize.py`. The hunk takes this branch's side. (The merge commit's message says "re-adds"; this is the exact account.)
  - #409's auto-merged import of `PIN_SOURCE_ENV_PREFIX, pin_source_env_collisions` is dropped, because nothing in the file uses either name any more.
  - It is not `git checkout --ours` of the whole file. Main changed the file beyond #409 since this branch last merged it: #355's `--tracking-branch` check (6c2a371) and a73b4e9's `RULESET_HINT`. Those lines stay.
  - The result is the file `git merge-tree` gives for this branch with main before the squash (518010b). Its diff from the file tested here has the same patch-id as main's own 3ef059c..518010b change to it.
- **`templates/assembly-root/scripts/validate-pins.py`.** Main's side, which is #409's final blob, with main's #359 workflow reader in it. This branch had no change of its own to the file beyond #409.
- **`adopt-project.py`, `_commit_the_split`.**
  - Main: #445 wraps the function in its late-failure `try`, and #394 builds an `append` with the plan's submodule record.
  - This branch: its only edits there were a comment and `neutral_pins=_recorded_pins(plan)` on the materializer call.
  - Both now sit on main's call inside the `try`: `append=append, neutral_pins=_recorded_pins(plan)`.
- **`docs/cli.md`.** It is regenerated with `scripts/render-cli-reference.py`, and `--check` is ok. It differs from main's only in the `--pin`, `--pin-owner` and `--pin-source` help of `adopt-project.py plan`.

`scripts/repo_shape.py`, `templates/assembly-root/scripts/validate-pins.py` and `tests/test_pin_source_env_collisions.py` are main's blobs, which are #409's: this branch adds nothing to them. Nothing of #409 is lost. Its scaffold behaviour is `shape_materialize.refuse_colliding_pins` and `pin_variable_collisions`, keyed by #409's `pin_product_key`.

**73d65c6, after the merge.**
- **The change.** `_read_pins` reads `plan.get("pins")` where it read `plan.data.get("pins")`.
- **Why.** #445's `tests/test_adopt_late_failure.py` hands `_commit_the_split` a `SplitPlan` as its plan, a `dict` that adds `entries`. On f9ed46f, three of its tests stopped at "committing the split" with `AttributeError: 'SplitPlan' object has no attribute 'data'` (3 failed, 83 passed in that file).
- **Nothing else changes.** `Plan.get` with no default returns `plan.data.get(key)` exactly, so a loaded plan reads as before.

`adopt-project.py plan --pin` took a NAME only (`--pin openGlass`) and refused a trailing `@<commit>`. `plan`, `check` and `execute` each exited 0, and `execute` printed `adoption verified`. The manifest then listed the name in `neutral_product_pins:` with no `contracts/<product>-pin.yaml` beside it, and on its first run the adopted root's own `validate-pins.py` refused it as `neutral-pin-missing`.

#273's table, reproduced on c7c02fa with the issue's own commands (local bare remotes, and a stub `gh` that exits 97):

| `--pin` | c7c02fa | this branch |
|---|---|---|
| `openGlass` | `execute` exit 0, `- openGlass`; clone's `validate-pins.py` exit 2 `neutral-pin-missing` | `plan` exit 2 `pin-malformed`, with the scaffold's remediation (`--pin openGlass@<40 hex>`); no plan is written |
| `opensoft/openGlass` | exit 0, `- opensoft/openGlass`; exit 2 `neutral-pin-missing` for `contracts/opensoft/openglass-pin.yaml` | `plan` exit 2 `pin-malformed` |
| `spec` | exit 0; `validate-pins.py` exit 0, reading the leg's `contracts/spec-pin.yaml` as the neutral pin | `spec@<sha>` is `adopt-pin-collides` at `plan` |
| `shape` | exit 0; `contracts/shape-pin.yaml` read as the neutral pin | `shape@<sha>` is `adopt-pin-collides` at `plan` |
| `openGlass@<sha>`, `opensoft/openGlass@<sha>` | `plan` exit 2 `adopt-pin-malformed` | `plan`, `check` and `execute` exit 0, and `gh` is called 0 times. `contracts/openglass-pin.yaml` is written and the manifest lists `- openGlass`. In the clone, `validate-manifest.py` exits 0, and `validate-pins.py` exits 0 with `openGlass: pin commit … digest recomputes` |

Brett ruled for decision 1's first option ("go with your recommendation on #273"): adopt takes the scaffold's pin and writes the scaffold's pin file. That reverses the NAME-only `--pin` from #6, and the comment that described it is replaced with the new contract.

- **One implementation.** The scaffold's pin code moved into `scripts/shape_materialize.py`, next to `neutral_pin_path` and the materializer that writes the file. What moved:
  - `PIN_ARG_RE`, `parse_pin`, `pin_digest_from_source` and `pin_digest_from_gh`;
  - `declared_pin_values`, `declared_pin_products` and `PIN_COLLISION_REMEDIATION` (in #309's wording);
  - from #275's branch, `PIN_VARIABLE_REMEDIATION` and the variable check;
  - `_refuse_colliding_pins`, split into the pure `pin_collisions` and `pin_variable_collisions`, and `refuse_colliding_pins(refusal=...)`, which raises one refusal for both.

  The code did not move verbatim. `_refuse_colliding_pins` became the three functions above; `pin_digest_from_source` was rewritten for #339 (below); and fix round 1 changed three of them (below): `pin_variable_collisions` keys each pin by #275's `pin_product_key`, `pin_digest_from_source` spells a path that is not printable, and `pin_digest_from_gh` refuses a missing `gh`. The scaffold's behaviour is otherwise unchanged. `scaffold-project.py` imports what it calls under its old names. Lane 5's review ran 34 scaffold cases (every pin refusal, the `gh` stub's four modes, dry and real successes) on 34dbd86 and on this branch at 7a94b6b. rc, stdout, stderr, the `gh` log and the files made were identical, apart from the shape's own commit and digest and #339's row. Its pin tests and #275's pass as they are. `tests/test_git_output_decoding.py`'s exemption for `pin_digest_from_gh` follows the function to its new file.
- **`plan`.** `--pin`, `--pin-owner` and `--pin-source` mean what they mean for the scaffold. `plan` reads the digest from `--pin-source` or `gh api`, and records product, repository, commit, digest and `digest_source` in the plan, so `check` and `execute` read no network for a pin. `plan` refuses:
  - a name with no `@<commit>`, as `pin-malformed`. That includes an empty `--pin ''`, which adopt used to drop and now refuses, as the scaffold always has;
  - `spec`, `code` and `shape`, in any case, as `adopt-pin-collides` (#273 decision 4), in the scaffold's sentence and remediation (#241, #309);
  - one product given twice, the same way, whether it is a repeat or two names that share one file (decision 5);
  - two products that one `SHAPE_PIN_SOURCE_<PRODUCT>` names, such as `open-glass` and `open_glass`, the same way, through #275's check;
  - a leg path over a pin's file, as `adopt-leg-path-collides`;
  - a `--pin-source` path that `check` would refuse in `digest_source:` (fix round 1), as `adopt-unwritable-value`. It is asked only when a `--pin` records the path;
  - with no `gh` on PATH and no `--pin-source`, `gh-not-found` (fix round 1).
- **`check` and `execute`.** These are new `check` findings, and `execute` refuses each one before any leg exists. They come from `_leg_findings`, the list `check` and `_refuse_what_check_finds` share:
  - `plan-pin-unrecorded`: a name alone (an old plan's `pins: [openGlass]`, or a hand edit), or an entry missing its commit or digest;
  - `plan-pin-malformed`;
  - `plan-pin-collides`, which covers two pins at one file, a pin at a file the shape writes, and two products that share one source variable;
  - `plan-root-holds-pin`: a source path kept in the root at the pin's file. The materializer would write the shape's pin beside it under `shape/`, and `validate-pins.py` would read the source's file instead.

  How each finding ends:
  - `plan-pin-unrecorded` and `plan-pin-malformed` end with the `plan --pin <product>@<40 hex commit>` that records the pin whole.
  - `plan-pin-collides` ends with re-running `plan` with each product once, or, for two products that share a source variable, with one product of each such group.
  - `plan-root-holds-pin` ends with the kept path's own remedy: send that entry to a leg, `drop` it, or rename it in the source and re-run `plan`.

  A leg moved over a pin's file in the plan is `plan-leg-path-collides`.
- **Also part of #386: its `pins:` row.** A hand-edited `pins:` that is not a list (a name such as `pins: openGlass`, a number, a mapping, a quoted string) is now `plan-pin-malformed` in `check` (`` `pins:` is 'openGlass', not a list of pins ``), and `execute` refuses it before any leg exists.
  - Where: `_read_pins` in `adopt-project.py`; the test row is `plan-pin-malformed-not-a-list` in `tests/test_adopt_pins.py`.
  - Before: on main, `check` said `plan ok` for the name, the mapping and the string, and gave a traceback for the number (reproduced by lane 5's review on cb7063f). #386 records that `execute` then wrote the name as eight one-letter pins.
  - Not fixed here: #386's other keys, `allow_empty_legs:`, `paths:`, `legs:` and `source:`, so #386 stays open. Lane 2's #435 takes all of #386, `pins:` included, and its `pins:` rule keeps only text items where this branch writes mappings; whichever lands second reconciles them (#435 (comment), and "Where the meaning meets" below).
- **`execute`.** It writes each pin through `materialize_assembly_root(neutral_pins=...)`. The manifest lists the product with the owner stripped (decision 3), so the entry and the file agree.
- **Docs.** `--help` is updated and `docs/cli.md` regenerated (`render-cli-reference.py --check` ok).

`pin_digest_from_source` caught only `Refusal`. A directory that is no clone is git's own failure, so it was always `pin-source-unreadable`, exit 2. A path `subprocess.run` cannot enter never reaches git: it is a `FileNotFoundError`, `NotADirectoryError` or `PermissionError` out of `cwd=`, and nothing caught it. `scaffold-project.py --pin ... --pin-source <that>` ended `--dry-run` and the real run alike in a traceback, exit 1. Since the move above, `adopt-project.py plan --pin` reads its digest through the same function and ended the same way. Both reach it through `declared_pin_values`, and `check` and `execute` read no source, so that call is the only reader.

The issue's table, run on ab623dd for the scaffold and on d806e8f for `adopt-project.py plan` (adopt has no `--pin-source` on ab623dd), then on this head. `gh` is a stub that logs and exits 97, with `GH_TOKEN` bogus and an empty `GH_CONFIG_DIR`; it was called 0 times in every run:

| `--pin-source` | before | this branch |
|---|---|---|
| a directory that is not a clone | `pin-source-unreadable`, exit 2 | unchanged |
| a path that does not exist | `FileNotFoundError` traceback, exit 1 | `pin-source-unreadable`, exit 2: `<path> could not answer for opensoft/openGlass @ <40 hex>: no such directory` |
| a file | `NotADirectoryError`, exit 1 | exit 2, `... it is a file, not a directory` |
| under a parent this user cannot enter | `PermissionError`, exit 1 | exit 2, `... Permission denied` |
| a symlink loop (not in the issue) | `RuntimeError` out of `Path.resolve()` on 3.12, exit 1 | exit 2, `... Too many levels of symbolic links` |

The real run and `--dry-run` give the same stdout and stderr, and nothing exists afterwards (no remote directory, no work directory; for adopt, no plan file).

What changed, in `scripts/shape_materialize.py` only:
- `pin_digest_from_source` catches `OSError` as well as `Refusal` and raises the existing `pin-source-unreadable` with its remediation unchanged. The message names the path and the reason.
- `stat()` judges the source inside the guard, as #312 does in `validate-pins.py`, and the sentences are that file's: a missing path, or one beneath a file, is "no such directory"; a file is "it is a file, not a directory"; any other `OSError`, from `stat()` or from git's `cwd=`, is the system's own reason (`strerror`). It is not `exists()`/`is_dir()`, which before 3.14 swallow only a missing path. A source `stat()` can read but `cwd=` cannot enter, a directory with no search bit, fails in `tree_digest` and the same guard answers it.
- `declared_pin_values` resolves the path through a guarded `_resolved_pin_source`. `Path.resolve()` raises a `RuntimeError` on a symlink loop before 3.13 (an `OSError` since), before the digest was asked for. As typed, `stat()` meets the loop and says so.
- A source that answers is read exactly as before: a relative path resolves against the working directory, a symlink to a clone is followed, `digest_source` reads `local-clone (<path as typed>)`, and the digest is `tree_digest`'s.

`tests/test_pin_source_unreadable.py` (46 tests in the #339 commit; fix round 1 adds 17 for S1 and moves one, below) runs each case through `scaffold-project.py --dry-run`, its real run and `adopt-project.py plan`: missing, a file, beneath a file, relative and missing, a parent and a source with no search bit (skipped on Windows and as root, by a mark, so before any fixture builds a directory), a 300-character name, a symlink loop (skipped on Windows) and a directory that is no clone. Each asserts exit 2, the refusal naming the path and the reason, its remediation, no traceback and nothing created. It also holds `--dry-run` and the real run to the same stdout and stderr, checks the path is printed escaped under an ASCII stderr and as a surrogate when it is not UTF-8, and checks that a relative source and a symlink to a clone read as before. The session `gh` guard fails any test whose run called `gh`.

origin/main ab623dd reached this branch through implQ's branch: 34dbd86 is a30091f merged with ab623dd. One file conflicted there, `templates/assembly-root/scripts/validate-pins.py`, in seven hunks, because #312 (8cdca5e) replaced `keyed_sources` and `default_source` with `PinSources` and #275 added `env_shared` and `shared`. #312's blob is the same at its PR head, at the squash and at ab623dd, so it landed the file implQ resolved against. The resolution keeps #312's side in all seven and adds #275's on top:

| # | hunk | resolution |
|---|---|---|
| 1 | `resolve_neutral_pin_source` signature | #312's `sources: PinSources` and 3-tuple return, plus #275's `env_shared: bool = False` |
| 2 | its docstring tail | #312's `Returns (path, how, typed)` text, plus #275's "Rule 2 is skipped when `env_shared`" paragraph |
| 3 | `_recompute_neutral_pin_digest` signature | #312's `sources`, plus #275's `shared: frozenset[str]` after `report` |
| 4 | the `resolve_neutral_pin_source(...)` call inside it | #312's 3-tuple unpack, plus `env_shared = product.casefold() in shared` and the extra argument |
| 5 | `_check_one_neutral_product_pin` signature | #312's `sources`, plus #275's `shared` |
| 6 | its call of `_recompute_neutral_pin_digest` | `sources, report, shared` |
| 7 | `_check_neutral_product_pins` docstring and body | #312's `PinSources(...)` and `_note_unused_pin_sources`, plus #275's paragraph, `_report_pin_source_collisions(products, report)` and `shared = frozenset(pin_source_env_shared(products))` |

This branch's own merge of 34dbd86 (5690235) had no conflict, and neither had its merge of #409's fix round, 6494714 (583f647). That fix round made `neutral-pin-source-collides` a note and keyed "one product" by `repo_shape.pin_product_key`. At 421e4e5, `templates/assembly-root/scripts/validate-pins.py`, `scripts/repo_shape.py` and `tests/test_pin_source_env_collisions.py` were byte-identical to the tree `git merge-tree` gives for 6494714 with origin/main 3ef059c (blobs 5604007, 091966b, 5220787), so this branch added nothing to those three files beyond #409. The 34dbd86 merge brought in #335, #312, #317, #270 (f795cf7), #344 and #349 with no conflict. Earlier merges of origin/main (87373a6, for #309's reworded constant, and e43fa95) are unchanged.

Fix round 1 merged origin/main three more times:
- **cd1fc79 (2bcfa69).** It brought #245, #351, #350, #345, #372, #371, #354, #380, #377 and the rest since ab623dd, with no conflict.
- **45e01f4 (4098b61).** It brought #396's `tests/test_agents_md_codes.py`. That test finds `scaffold-pin-collides` as a string constant of `scripts/shape_materialize.py`, which `SHIPPED` lists.
- **3ef059c (421e4e5), #314.** One conflict, one hunk in `adopt-project.py`. This branch's `_refuse_an_unrecordable_pin_source` and #314's section "The project must be able to hold what `execute` writes into it (#261)" were added at the same place; both are kept. Where the two meet, lane 5's earlier recipe applies:
  - `_flag_plan` builds each pin as the `PIN_FIELDS` mapping `plan` writes, not `list(pins)` of products. So the plan `plan` asks the validator about is the plan it writes.
  - #314's `test_plan_asks_what_check_asks_of_the_same_keys` plans `--pin openGlass@<commit> --pin-source <stand-in>` where it planned the name alone, which `plan` now refuses.

Then f9ed46f, after #409 squash-landed, and 73d65c6 after it (top of this description).

On the merged tree exactly one test failed: `tests/test_adopt_template_values.py::test_check_finds_and_execute_refuses_a_hand_edited_value[pins-surrogate]`. It plans, then hand-edits the plan to `pins: ["openX\ud800"]`, a name-only pin with a lone surrogate. Before this branch the refusal's headline was `REFUSED plan-unwritable-value`. A name-only pin in a plan is now `plan-pin-unrecorded` (#273), so `check` has a second, independent finding for that very plan, and the headline is the first finding's:

```
REFUSED plan-pin-unrecorded: 2 finding(s) ...
FINDING plan-pin-unrecorded: `pins:` entry 1, 'openX\ud800', is a name with no commit and no digest ...
FINDING plan-unwritable-value: a `pins:` item is 'openX\ud800', which `execute` writes into the assembly root's `project.yaml`, and it holds a lone surrogate ...
```

Nothing about #270's contract changed. The lone surrogate is still found as `plan-unwritable-value`, listed under the refusal, and `execute` still refuses before any leg exists. `check` builds `_leg_findings`, where `_pin_findings` sits, before it calls `_value_findings`, so the pin finding comes first. d806e8f changes one assertion for that row, `pins` only: the headline is `REFUSED plan-pin-unrecorded: ` where it was `PLAN_REFUSED`. The other 15 rows and the finding assertions, including the `plan-unwritable-value` line, are untouched.

Lane 5's review of 7a94b6b found 3 should-fix and 5 nits. Each is answered here:
- **#409's `pin_product_key` (review N1).** The merge of #409's fix round could not carry it, because this branch had moved the function that used it out of `scaffold-project.py`. `pin_variable_collisions` now keys each pin by that function, where it casefolded. `openß` and `openss` are two pin files and one `SHAPE_PIN_SOURCE_OPENSS`, and a casefold named each of the two pins twice. No `--pin` or recorded `pins:` entry `PIN_ARG_RE` admits can spell either, so the test asks the function directly. `refuse_colliding_pins`' docstring now says, in #409's words, that the root's `validate-pins.py` only notes such a pair.
- **S1, a `--pin-source` path that is not printable.** `pin_digest_from_source` names the path as typed unless it is not printable (`str.isprintable`), and then as Python's `repr` spells it (`shown_source`). That covers the refusal's head and git's own reason, which names the directory it ran in. Printed raw, an ESC reached the terminal, and a line break or a carriage return began a line of the path's choosing, a forged `REFUSED` line among them, from the scaffold and from adopt. The traceback #339 replaced had shown a `repr`. A printable path is named byte for byte as before.
- **S2, no `gh` on PATH.** `pin_digest_from_gh` refuses as `gh-not-found`, exit 2, as `repo_shape.tree_digest_from_gh` names it, and offers `--pin-source`. It was a `FileNotFoundError` traceback, exit 1, from the scaffold and, new with this branch, from `adopt-project.py plan --pin`.
- **S3, a hand-edited `commit:` or `tree_sha256:`.** The lane's decision is to accept it and document it (option (c)); no behaviour changed. A pair that disagrees passes `check` and `execute` (`adoption verified`), because neither reads a network for a pin, by design. The adopted root's own `validate-pins.py` then exits 1 with `neutral-pin-digest-mismatch` wherever it can read the product. `check` now says so once, after the pins it will write: "each pin as `plan` read it, not read again here: the root's own `validate-pins.py` recomputes its digest wherever it can read the product". Options (a), `execute` recomputes before it creates the legs, and (b), `check` recomputes from a clone still on the machine, are filed as #449.
- **N2, a `--pin-source` that `plan` cannot record.** `plan` asks `check`'s question (`one_printable_line`) of the path it records in each pin's `digest_source:`, before any digest is read. It refuses one that fails as `adopt-unwritable-value`, in #270's words (`unwritable_reason`), or as "an invisible formatting character" where those name nothing. Before, it was planned, exit 0, and printed raw in the report. `check` then refused it as `plan-pin-malformed` and said to re-run the same `plan`. The report's `pin` line and `check`'s `write` line now spell the digest's source with `_shown`. The scaffold half is pre-existing (a line break in the path is written into the pin file; a byte that is not UTF-8 dies after all three repositories exist) and is filed as #450.
- **N3, six hunks no test guarded.** Each now has a test that fails when it alone is reverted:
  - the two name guards (a `pins:` name holding an ESC and a forged line);
  - the lower-casing of the commit and the digest (an upper-cased hand edit);
  - the `digest_source` printability check;
  - the not-text check (`commit: 1234567` unquoted);
  - the gitlink filter (a submodule kept where the pin is written is `plan-submodule-root` alone).
- **N4.** This body.
- **N5, #339's third decision.** A `--pin-source` that nothing reads is still silent, now in adopt too. This PR does not decide it. #451, filed, lays out refuse, note and leave, so closing #339 loses nothing.

Lane 5's second review, of 421e4e5, found no blocking item, 2 should-fix items and 3 nits. The two should-fix items are this body: the landing after #409 (above) and #386 (above). The code needed no change for them. f63d1ed adds two tests and no code:
- **n1. `plan` asks nothing of a `--pin-source` no `--pin` records.** With the `args.pin and` guard dropped, such a path holding an ESC or a zero-width joiner was refused in a sentence naming no file ("`execute` writes into , and ..."), and every test still passed. `test_a_pin_source_no_pin_records_is_not_asked_about` holds the plan to exit 0 and `pins: []`, with the path named nowhere in the plan or the report. The ESC row is POSIX-only by the file's `POSIX_NAMES` mark; the zero-width joiner row runs everywhere. It holds #451's answer today, silence, so a decision there changes this test on purpose.
- **n2. A printable `--pin-source` is printed as it is.** With `_spelled` in place of `_shown` in `plan`'s `pin` line, every test still passed. `test_a_printable_pin_source_is_printed_as_it_is` holds `plan`'s `pin` line, and `check`'s `write` line for the plan `plan` wrote, to their exact text, ending `(local-clone (<path>))` with no backtick.
- **n3** needs a code change and is left out (below).

**Fix round 2, on f63d1ed.** Each run had a `gh` stub first on PATH (it logs and exits 97), `GH_TOKEN` bogus, an empty `GH_CONFIG_DIR`, `git-filter-repo` 2.47.0 next on PATH, and the identity blanked with `GIT_CONFIG_COUNT`; the session `gh` guard came first inside each run.
- **The pin set: 812 passed, 2 skipped.** It covers adopt pins, adopt plan, #339's file, #275's tests, the pin and neutral-pin validators, git output decoding, adopt template values, CLI reference, scaffold pin and reuse, scaffold pin collisions, #314's two files and #396's file. The skips are `test_adopt_plan.py:403` (no MedxEHR clone) and `test_adopt_template_values.py:223` (this host reads `git config user.name` from the repository, not from `GIT_CONFIG_GLOBAL`). That is fix round 1's 809 passed, plus the three new rows.
- **Shape doctor and scaffold leg-path collisions: 369 passed, 3 skipped** (the PowerShell line exists only on a Windows host).
- **Mutation probes**, each one line changed in a throwaway worktree, over `tests/test_adopt_pins.py` and `tests/test_pin_source_unreadable.py` less the five end-to-end adoptions:
  - the `args.pin and` guard dropped: 2 failed, both n1 rows;
  - `plan`'s `pin` line `_spelled`: 1 failed, the n2 test;
  - `check`'s `write` line `_spelled`: 2 failed, the n2 test and `test_an_upper_cased_hand_edit_is_written_lower_cased`;
  - `plan`'s `pin` line raw: 1 failed, the no-break-space test that already guarded that hunk.

**On the merged tree, 73d65c6** (the merge f9ed46f and the `_read_pins` commit), with the same harness:
- **The pin set** above, with #445's `test_adopt_late_failure.py`, `test_adopt_git_reads.py` and `test_adopt_filter_repo_failure.py` and #387's `test_adopt_empty_symlinks.py` and `test_adopt_root_manifest.py`: **988 passed, 2 skipped**. The skips are the two above.
- **Shape doctor, scaffold leg-path collisions and the adopt suites:** **967 passed, 3 skipped** (the PowerShell line). The adopt suites are e2e, execute refusals, verify, root shape paths (#387's too), leg-path collisions, clone template, ignored shape files and submodules.
- **On the merge alone, f9ed46f** (the same tree as before the `_read_pins` commit): `tests/test_adopt_late_failure.py` gave 3 failed, 83 passed, the three `AttributeError` rows above.
- `render-cli-reference.py --check` is ok on the merged tree. pyflakes reports the same four warnings on `adopt-project.py`, `scaffold-project.py` and `scripts/shape_materialize.py` as before the merge.

**Fix round 1, on 421e4e5.** Each run had `git-filter-repo` 2.47.0 on PATH and the identity blanked with `GIT_CONFIG_COUNT`. A `gh` stub that logs and exits 97 was first on PATH, with `GH_TOKEN` bogus and an empty `GH_CONFIG_DIR`, and the session `gh` guard came first inside each run.
- **The pin set:** 809 passed, 2 skipped (the same files and skips as above).
- **Doctor and scaffold:** 782 passed, 3 skipped (the PowerShell line exists only on a Windows host). It covers shape doctor, scaffold leg-path collisions, scaffold e2e, referent chain links, naming policy, repo hygiene and #351's free-text values.
- **The adopt suites:** 882 passed. It covers e2e, execute refusals, verify, spec-only, leg paths, root shape paths, plan escapes, leg-path collisions, clone template and submodules.
- **Before the #314 merge,** on 74ce4d9's tree: the first two sets gave 577 passed, 2 skipped and 782 passed, 3 skipped. On 2bcfa69's tree (the merges alone, before the fix) they gave 542 passed, 2 skipped and 782 passed, 3 skipped. After the 45e01f4 merge, `tests/test_agents_md_codes.py`, repo hygiene and CLI reference: 110 passed.
- **Lane 5's second review** also ran 421e4e5 merged with main cb7063f and with 53bee5b: the pin set, the manifest-value set, and the doctor set with #357's `tests/test_doctor_validator_rows.py`. All passed, with only the skips above.

Proof that fix round 1's tests test something:
- **On 2bcfa69's tree,** with this head's two test files laid over it, 31 of the new rows fail:
  - S1: 17;
  - N2 and its report spelling: 7;
  - S2: 3;
  - the `pin_product_key` port: 2;
  - `check`'s S3 line: 1;
  - the not-UTF-8 `adopt plan` row: 1.

  The N3 rows pass there, as they must: they guard hunks this branch already had.
- **Mutation probes.** Each hunk was reverted alone, in a throwaway worktree, and both test files were run: 18 of 18 were caught.
  - **The port:** the casefold keying (2 fail); the casefold lookup alone (2).
  - **S1:** the path named raw (13); git's reason named raw (2); every path `repr`'d, printable or not (27).
  - **S2:** no `except` (3).
  - **N2:** no `plan` check (11); only #270's question asked (1); the formatting-character reason said otherwise (1); the report's `pin` line raw (1); `check`'s `write` line raw (1).
  - **S3:** the line dropped (1).
  - **N3:** the `_pin_fix` name guard (1); the `_read_pins` path guard (1); the lower-casing (1); the `digest_source` check (1); the not-text check (1); the gitlink filter (1).
- **The issue rows reproduced.** S1, S2 and N2 were reproduced on 2bcfa69's tree and shown gone on the fix (a probe driving both tools; `gh` was called 0 times).

**Before fix round 1.** Runs were on 7a94b6b, with `git-filter-repo` 2.47.0 first on PATH and the repository-local `user.name` blanked with `GIT_CONFIG_COUNT` (a workstation whose standard checkout sets one fails `test_the_scaffold_refuses_with_no_elector` on main itself; CI sets none). 7a94b6b differs from ffd1297 in `tests/test_pin_source_unreadable.py` only, so the three suites that do not read that file ran on ffd1297:

- the new file: 46 passed;
- adopt pins, adopt plan, git output decoding: 172 passed, 1 skipped (the MedxEHR clone is absent);
- scaffold pin and reuse, pin collisions, e2e, referent chain links, neutral pin and pin validators, #275's tests, naming policy, repo hygiene, CLI reference, scaffold leg-path collisions: 571 passed;
- shape doctor: 254 passed, 3 skipped (the PowerShell line exists only on a Windows host);
- the new file with repo hygiene, git output decoding and CLI reference, once more after the last edit: 176 passed.

Earlier on 5690235 and d806e8f, before the #339 commit: the adopt suites (e2e, execute refusals, verify, spec-only, leg paths, root shape paths, plan escapes, leg-path collisions, clone template) 740 passed, and `tests/test_adopt_template_values.py` with #273's other adopt tests 489 passed, 2 skipped. They were not re-run on 7a94b6b: the #339 diff touches `pin_digest_from_source` and the call in `declared_pin_values`, which those suites reach through `test_adopt_pins.py` only. Nothing was run on macOS or Windows.

Proof the new tests test something:
- **On d806e8f.** 38 of the 46 fail, each on the traceback and its exit 1. The 8 that pass are the unchanged behaviour: the not-a-clone refusal (4 rows) and the valid-source rows (4).
- **Mutation probes.** Ten hunks reverted one at a time, each failing at least one new test: the `OSError` catch (16 fail), the catch narrowed to `OSError` only (21), the missing-path clause (9), the clause narrowed to `FileNotFoundError` (3), the `S_ISDIR` judgement (3), the loop guard (4), no resolve at all (3), the old `.resolve()` call (4), the reason as `str(exc)` (12), and the file sentence as the OS's (3).
- #273's own 52 tests still fail on c7c02fa (51 fail or error; the one that passes checks the test's own table), and its 18 mutation probes were each caught.

**Re-verified after the merge.** An independent re-verification of f9ed46f and 73d65c6 found the code correct:
- #409 is carried whole. A 30,000-case fuzz of `--pin` lists through #409's final refusal and this branch's port differed in 0 cases.
- `scaffold-project.py` equals the tested file plus main's own changes that are not #409's (same patch-id).
- `_commit_the_split` keeps #445's `try` and #394's `append`.
- `_read_pins` reads a loaded plan as before.

Its findings were all in this description (the #506 bullet and three stale facts), now fixed. Runs on the head and on its merge with main 48585e6: 988 passed, 2 skipped; and 967 passed, 3 skipped.

`git merge-tree --write-tree` was run at 01:48Z on 2026-10-13, comparing hunks per file. Each PR head, fetched from `refs/pull/<n>/head` with no `gh`, was merged with 73d65c6 and with origin/main 9736424 alone. Two sets were asked about:
- every PR this description listed before that main does not now contain;
- every PR numbered above #468 whose head main does not contain: #473, #474, #490, #491, #493, #494, #495, #496, #497, #503, #504 and #505.

**Open state, read with `gh` by the coordinator at 02:00Z and refreshed at 02:25Z after a re-verification on main 48585e6.** Every pull request named below is open. #184, #94, #96, #98, #100 and #161 are closed, and #465 landed as 48585e6. `fix/adopt-plan-quote-yaml-keywords` has no pull request. #506 (`fix/scaffold-reuse-seeded-legs`) opened after this list was made, and the re-verification reads it.

- **Landed since the last draft of this list:** #343, #346, #355, #358, #373, #378, #382, #387, #394, #397, #401, #404, #409, #419, #452, #456, #465, #466 and #484. #394's `_commit_the_split` conflict and #401's `docs/cli.md` conflict are both resolved in f9ed46f, above.
- **Clean, 20:** #266, #347, #356, #374, #376, #384, #395, #453, #467, #468, #473, #474, #490, #491, #493, #494, #495, #497, #503 and #505. #453, #468 and #491 were updated onto main since the first read and now merge clean. #507 (lane 5's #486-#488) shares only the generated `docs/cli.md` with this branch and merges clean with it.
- **Conflicting with main alone, and this branch adds no hunk:**
  - #402: `shape-doctor.py` 5;
  - #496: `shape-doctor.py` 10 and `tests/test_shape_doctor.py` 1.

**Conflicts this branch adds:**
- **#435** (3efcc7a, lane 2's `fix/adopt-plan-field-types`, for #386).
  - It adds 2 hunks in `adopt-project.py`: 5 here, against 3 with main alone. They are `render_plan`'s `pins:` line and `Plan.pins`.
  - Keep this branch's `_pin_lines` and `_pin_products`. The rest is under "Where the meaning meets".
- **#504** (37ef29a, `fix/adopt-root-kept-symlinks`).
  - It adds 1 hunk in `adopt-project.py`: 2 here, against 1 with main alone. It is the materializer call in `_commit_the_split`.
  - Keep both arguments and both comments: `append=append, neutral_pins=_recorded_pins(plan), spell=_spelled`.
- **#506** (119d8c4, `fix/scaffold-reuse-seeded-legs`).
  - It adds 1 hunk in `scaffold-project.py`. With main alone, #506 conflicts only in `docs/handbook.html`.
  - #506 inserts `LEG_TEMPLATES` right after `declared_pin_products`, which this branch moved out, and rewrites `_reusable_remotes` further down. Keeping both sides breaks the file with an unterminated string literal.
  - Keep only #506's `LEG_TEMPLATES` block. Drop #506's `declared_pin_values`/`declared_pin_products`, which moved here, and this branch's three-line `_reusable_remotes` opener, which #506 rewrites below. Resolved that way, pyflakes is clean and #506's scaffold tests pass (88).
- **`fix/adopt-plan-quote-yaml-keywords`** (ed9968f; a branch with no pull request).
  - It adds 2 hunks in `adopt-project.py`: 3 here, against 1 with main alone.
  - One is `render_plan`'s `pins:` line. Keep `_pin_lines`, which already sends product, repository and `digest_source` through `y`.
  - The other is `_refuse_unholdable_values`' signature. Keep `pins: dict`, with that branch's `_validator_judged` and `_named_as_read` above it.
- `fix/adopt-late-failure-notice` is no longer on origin. #445, the late-failure notice, is on main and merged here.

**Where the meaning meets:**
- **#435 and #386.** The coordinator has said this on #435: #435 (comment)
  - #435's `_plan_key_findings` (`plan-bad-pins`) keeps only text items in `pins:`, and its `PINS_REMEDIATION` tells a person to write `pins: [openGlass]`.
  - This branch writes each pin as a mapping, and it makes a name alone `plan-pin-unrecorded`.
  - Read from #435's code, not run: on a tree with both, the plan `plan --pin` writes is `plan-bad-pins` in `check`.
  - Whichever lands second reconciles them, with three changes:
    - `_plan_key_findings` takes this branch's mappings, or leaves `pins:` items to `_read_pins`;
    - a `pins:` that is not a list gives one finding, not both `plan-bad-pins` and `plan-pin-malformed`;
    - `PINS_REMEDIATION` says the mapping `plan` writes.
  - Until that is done, `tests/test_adopt_pins.py::test_a_plan_with_a_whole_pin_checks_ok` fails.
- **#314.** It landed, and it is merged here (above).
- **`fix/adopt-plan-quote-yaml-keywords`.** Its pin tests are written against the name-only `--pin`. They need the `name@commit` form, and their expected `pins: [...]` line becomes `_pin_lines`'s mapping.

- **Two unwritable values are refused in two runs (lane 5's second review, n3).** `plan --elected-by 'A<LF>B' --pin openGlass@<sha> --pin-source <a path holding an ESC>` refuses the elector alone, exit 2. Re-run with the elector retyped, it refuses the source; #270's refusal names every unwritable value at once. Reproduced on 421e4e5, with `gh` called 0 times. One refusal would need a code change, not made here:
  - `_refuse_an_unrecordable_pin_source` would split into a function that returns the sentence;
  - `_checked_plan_inputs` would ask it before #270's `unwritable_values` raise, and raise one `adopt-unwritable-value` that names both, with both remediations;
  - a test would add the two-value row.

  N2's question is `one_printable_line`, not `unwritable_reason`, so it cannot simply join #270's list.
- **Docs.** The README, AGENTS.md and `docs/handbook.html` are unchanged, because none of them calls adopt's `--pin` a name. A sentence saying adopt now takes the scaffold's `--pin` is a follow-up. It costs an AGENTS.md line-cap raise, and a README edit forces the handbook's README blob to change.
- **A product spelled `null`, `true` or `false`.** The scaffold already accepts `--pin null@<sha>`: it exits 0 and builds a root whose `validate-pins.py` exits 1 `neutral-pin-entry-malformed`. Adopt's `plan` writes `product: null` through `y`, and `check` then finds `plan-pin-malformed` and refuses it before any leg exists. The one fix for both tools is in `parse_pin`, and it would change the scaffold's behaviour.
- **Wording shared with the scaffold.** `digest_source` is written bare into the pin file, so a `--pin-source` path holding ` #` is cut short there. `templates/assembly-root/contracts/neutral-product-pin.yaml` and `validate-pins.py`'s `neutral-pin-missing` remediation name only the scaffold as the writer. Two comments in `scripts/repo_shape.py` still name the scaffold's `pin_digest_from_gh`, in a digest-pinned shipped copy.
- **Filed as follow-ups:**
  - #449: S3, a hand-edited `commit:` or `tree_sha256:` that disagrees, with options (a) and (b);
  - #450: the scaffold half of N2, a `--pin-source` path no file can hold;
  - #451: #339's third decision (N5), a `--pin-source` that nothing reads.
- **`validate-pins.py` prints a `--pin-source` path raw** in `neutral-pin-source-unreadable`, the twin of S1. It is a shipped template that #409 and other open PRs edit, so it is left for its own change. No issue is filed for it yet.
- **Windows and macOS** were not run here; CI ran both (below). Two assertions that depend on what Windows answers for a path (a name past the filesystem's limit, a path beneath a file) check only the refusal and its remediation there. Fix round 1's rows that need a control character or a byte that is not UTF-8 in a path, or a symlink to `git`, are skipped on Windows by a mark, and so is fix round 2's ESC row. The rows for a no-break space and a zero-width joiner run everywhere, and so does the in-process `gh-not-found` test.

Reviewed independently by lane 5 at 7a94b6b (3 should-fix, 5 nits: fix round 1) and at 421e4e5 (0 blockers, 2 should-fix, 3 nits: fix round 2). After #409's squash, the re-verification of f9ed46f and 73d65c6 found the code correct; its 1 should-fix and 3 nits were in this description and are fixed. GitHub's update-branch then merged main twice (33bae3f, 2170526), with no hand edit. CI's tests, tests-macos and tests-windows and SonarCloud all passed at 2170526 (main cac6bb2 merged in). On that head merged with main 57c85e9 (#490, #474 and #468, none of which touches this branch's files), the pin and adopt set with `tests/test_update_shape_landing.py` gave 1112 passed, 2 skipped, and the doctor, adopt end-to-end, unfinished-merge and bootstrap set gave 1056 passed, 3 skipped (the doctor's PowerShell line, which exists only on a Windows host).

Closes #273
Closes #339

Lane: openreposhape-5 (openRepoShape-5)
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
brettheap added a commit that referenced this pull request Oct 16, 2026
…ared pin and a `--link-source` key are one product by `pin_product_key`, the pin file's own fold, so a tree declaring `openss` no longer verifies a chain that says `openß`, a chain naming both is two links and not a cycle, and `--link-source openss=` no longer answers for `openß` (#444) (#638)

#275's fix (#409) made a product's identity `pin_product_key`: two
declarations are one product when they share a pin file,
`contracts/<product lowercased>-pin.yaml`, which `validate-pins.py` reads.
The chain readers asked the same question with `casefold()`. The two folds
agree over ASCII and part company outside it (`casefold("openß")` is
`openss`, `lower("openß")` is `openß`), so for a hand-written manifest the
repository gave two answers to one question. Measured on main 8f453d0
with the issue's reproduction:

  C  a holder whose tree declares `openss` verified a chain that says
     `openß`: now broken, "openXdox declares openss, not openß", exit 1;
  D  a chain naming both was refused as a cycle: now two links, each read
     from its own tree, verified;
  E  a project pinning `openss` verified a chain beginning at `openß`: now
     broken, "it begins at openß, which is not in this project's
     `neutral_product_pins:`";
  F  `--link-source openss=` answered for the link `openß`: now `openss`
     keys no link, the value is a bare PATH and NOTEd, and `openß` is
     declared-unverified, exit 0;
  G  `link_pins_from_trees` kept one entry for the pair: now two.

The same fold decided four more answers, now alike: a direct pin on
`openGlaß` classified `codexGlass` as `openGlass`'s descendant; two chains
beginning at `openß` and `openss` counted one first link, so a bare
`--link-source` was read as both products' trees (#441's rule);
`scaffold-project.py --pin openss@<sha> --referent-chain openß,openInk`
planned a descendant through `openß` from `openss`'s `--pin-source`, where
it now refuses `chain-not-declared` before anything is created, dry run
alike; and a chain ENDING at another pin file than the referent's
(`codexGlass` pinning `openXdox`, recording `openXdox → openGlaß`) was
taken for one reaching `openGlass`, so the naming gate answered
`domain-descendant` and a real scaffold created all three repositories. The
gate now breaks that chain ("it ends at openGlaß, but codexGlass would need
openGlass or openxGlass") and the scaffold refuses it alike. So
`--referent-chain`'s first and last links, which were not ASCII-bound on
main, are bound now.

Every chain identity is keyed by `pin_product_key` now: `_pinned_basenames`,
`_referent_in`, `_link_declarations`, `_chain_link_findings`,
`resolve_referent`, `_chain_shape_problem`, `resolve_link_source`'s keyed
lookup and `link_pins_from_trees`' table in `repo_shape.py`, and
`LinkSources`' link, first-link, keyed and asked tables in
`validate-repository-naming.py`, which must key as the lookup does or a
keyed `openß=` would miss its link. No answer for an ASCII name moves:
`casefold(lower(c)) == casefold(c)` for every code point (0 exceptions on
Python 3.12.3, Unicode 15.0), so `lower()` only ever splits a group
`casefold()` makes, and over `[A-Za-z0-9_.-]`, every name GitHub, `--pin`
and the naming policy can spell, the two are the same function. A chain
that changes its answer is one whose link and declaration are two pin
files. A REPOSITORY compare is a different question and is left alone:
`same_repository` and `remote_key` fold a forge remote with `lower()` for
GitHub's ASCII case-insensitivity (#149), and no chain reader calls them.
`validate-pins.py`'s `PinSources` still keys `--pin-source` by `casefold()`:
a pin's digest stops a wrong source from passing, and its follow-up is on
#459's checklist.

`scripts/repo_shape.py` and `scripts/validate-repository-naming.py` are
shape copies (`COPIED_FROM_SHAPE`), one copy each in this repository and
digest-pinned only in the projects made from it, which read
`upstream-changed` for them until they re-pin, and a family holder, which
copies `repo_shape.py` alone, sees one such row; no test records a blob or
digest of either. `pin_product_key` has been in `repo_shape.py` since #409,
and the root's `validate-pins.py` already imports it. `scaffold-project.py`
changes in one docstring only, which said the first and last links were
"compared casefolded".

Closes #444

Lane: openreposhape-4 (openRepoShape-4)
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>
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