Issues

• Looper slow to execute with large PEP

  pepkit/looper#554 · Filter by author donaldcampbelljr opened on Sep 23, 2025
  9

• Merging samples causes sample attributes to be overwritten

  bug
  pepkit/looper#552 · Filter by author donaldcampbelljr opened on Aug 26, 2025
  1

• pipestat output schema seems to lack path templates

  question
  pepkit/looper#551 · Filter by author nsheff opened on Aug 20, 2025
  3

  

• Is it possible to use looper link on a generic pipeline?

  question
  pepkit/looper#550 · Filter by author nsheff opened on Aug 19, 2025
  1

• Optimize how and when looper checks pipestat config and allow user to overwrite when running samples

  enhancement
  pepkit/looper#549 · Filter by author donaldcampbelljr opened on Apr 7, 2025
  4

• Document subsample table and presubmission hooks

  docs
  pepkit/looper#540 · Filter by author donaldcampbelljr opened on Jan 28, 2025
  2

• Running a looper pipeline ad hoc

  enhancementhelp wantedquestionUX
  pepkit/looper#538 · Filter by author nleroy917 opened on Nov 26, 2024 · v2.1.0
  4

• divvy dev suggestions

  enhancement
  pepkit/looper#527 · Filter by author nsheff opened on Oct 9, 2024 · v2.1.0

• Speeding up looper CLI use

  enhancement
  pepkit/looper#476 · Filter by author nsheff opened on Mar 12, 2024 · v2.1.0
  4

• Discussion: add HTTP API for looper

  pepkit/looper#433 · Filter by author simeoncarstens opened on Dec 22, 2023 · v2.1.0
  5

• sample_modifiers and project_modifiers in looper config file

  pepkit/looper#270 · Filter by author nsheff opened on May 22, 2020 · v2.1.0
  14

• toggling derived attributes in looper summarize results.

  enhancementpriority-lowUX
  pepkit/looper#82 · Filter by author nsheff opened on Nov 27, 2018 · v2.1.0
  3