System tests on Linux

Workflow runs for System tests on Linux

• data/test_data/md5sum.txt: adding test hash for original gc content test

  completed successfully:
  System tests on Linux#144:Commit54af0b2pushedbyandrewdavidsmith
  main

  Oct 12, 20261m 12s
  More actions for workflow run 144

• Mode to output GC content using original FastQC smoothing

  completed successfully:
  System tests on Linux#143:Pull request#140openedbyandrewdavidsmith
  gc-content-grade

  Oct 12, 20261m 1s
  More actions for workflow run 143

• src/falco_analyzer.cpp: catching exceptions within threads for easier…

  completed successfully:
  System tests on Linux#142:Commitf464284pushedbyandrewdavidsmith
  main

  Oct 7, 20261m 19s
  More actions for workflow run 142

• Catching exceptions within threads for easier debugging

  completed successfully:
  System tests on Linux#141:Pull request#139openedbyandrewdavidsmith
  exceptions-from-threads

  Oct 7, 20261m 12s
  More actions for workflow run 141

• reads files: changing type for min_chunk_size because of compiler pro…

  completed successfully:
  System tests on Linux#140:Commit046572cpushedbyandrewdavidsmith
  main

  Oct 6, 20261m 38s
  More actions for workflow run 140

• Falco accepts BAM/SAM files without quality scores and stability added for small inputs

  completed successfully:
  System tests on Linux#139:Pull request#138openedbyandrewdavidsmith
  quals-optional

  Oct 6, 20261m 19s
  More actions for workflow run 139

• src/bgzf_reader.hcpp: moving the gzip file header struct into the sou…

  completed successfully:
  System tests on Linux#138:Commitc85e331pushedbyandrewdavidsmith
  main

  Oct 1, 20261m 16s
  More actions for workflow run 138

• Fixing potentially dangerous memcpy and cleaning up includes and clang-tidy checks

  completed successfully:
  System tests on Linux#137:Pull request#137synchronizebyandrewdavidsmith
  fix-includes2

  Oct 1, 20262m 52s
  More actions for workflow run 137

• Fixing potentially dangerous memcpy and cleaning up includes and clang-tidy checks

  completed successfully:
  System tests on Linux#136:Pull request#137openedbyandrewdavidsmith
  fix-includes2

  Oct 1, 20262m 33s
  More actions for workflow run 136

• Fixing potentially dangerous memcpy and cleaning up includes and clang-tidy checks

  completed successfully:
  System tests on Linux#135:Pull request#136openedbyandrewdavidsmith
  fixed-includes

  Oct 1, 20261m 26s
  More actions for workflow run 135

• src/falco.cpp: formatting

  completed successfully:
  System tests on Linux#134:Commite436027pushedbyandrewdavidsmith
  main

  Sep 30, 20261m 11s
  More actions for workflow run 134

• Fixing misleading user interface message related to memory buffer size

  completed successfully:
  System tests on Linux#133:Pull request#135synchronizebyandrewdavidsmith
  cleanup

  Sep 30, 202656s
  More actions for workflow run 133

• Fixing misleading user interface message related to memory buffer size

  completed successfully:
  System tests on Linux#132:Pull request#135synchronizebyandrewdavidsmith
  cleanup

  Sep 30, 20261m 16s
  More actions for workflow run 132

• Fixing misleading user interface message related to memory buffer size

  completed successfully:
  System tests on Linux#131:Pull request#135openedbyandrewdavidsmith
  cleanup

  Sep 30, 20261m 23s
  More actions for workflow run 131

• data/test_data/md5sum.txt: updating hashes for versions

  completed successfully:
  System tests on Linux#130:Commitfa907d9pushedbyandrewdavidsmith
  main

  Sep 27, 20261m 10s
  More actions for workflow run 130

• Version bump to v2.0.3

  completed successfully:
  System tests on Linux#129:Pull request#131openedbyandrewdavidsmith
  version-bump-to-203

  Sep 27, 20261m 14s
  More actions for workflow run 129

• src/task_queue.hpp: adding forgotten lock around assignment to stop v…

  completed successfully:
  System tests on Linux#128:Commiteda9f1dpushedbyandrewdavidsmith
  main

  Sep 23, 20261m 11s
  More actions for workflow run 128

• Bug fix in the task queue

  completed successfully:
  System tests on Linux#127:Pull request#130openedbyandrewdavidsmith
  race-fix

  Sep 23, 20261m 52s
  More actions for workflow run 127

• Merge pull request #129 from smithlabcode/clang-tidy-updates

  completed successfully:
  System tests on Linux#126:Commit57834d2pushedbyandrewdavidsmith
  main

  Sep 22, 20261m 0s
  More actions for workflow run 126

• Updating static analysis checks

  completed successfully:
  System tests on Linux#125:Pull request#129openedbyandrewdavidsmith
  clang-tidy-updates

  Sep 22, 202650s
  More actions for workflow run 125

• src/contaminants.hcpp: removing

  completed successfully:
  System tests on Linux#124:Commitf73acc6pushedbyandrewdavidsmith
  main

  Sep 21, 20261m 24s
  More actions for workflow run 124

• Refactoring contaminants to avoid non-const global

  completed successfully:
  System tests on Linux#123:Pull request#128openedbyandrewdavidsmith
  contaminant-set

  Sep 21, 20261m 14s
  More actions for workflow run 123

• adding mkdocs.yml and docs/index.md for readthedocs

  completed successfully:
  System tests on Linux#122:Commit11e07b3pushedbyandrewdavidsmith
  main

  Sep 14, 20261m 16s
  More actions for workflow run 122

• Updating docs on readthedocs

  completed successfully:
  System tests on Linux#121:Pull request#127openedbyandrewdavidsmith
  adding-docs

  Sep 14, 20261m 20s
  More actions for workflow run 121

• src/html.cpp: forgotten header

  completed successfully:
  System tests on Linux#120:Commit8f8c95fpushedbyandrewdavidsmith
  main

  Sep 10, 20261m 9s
  More actions for workflow run 120