🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
A statistical approach for clonal deconvolution in cancer using longitudinal NGS data
Website for the fibroblast clonality project conducted at EMBL-EBI and the Wellcome Sanger Institute ca 2017-2019.
Calculation of clonality (distances) based on color profiles (Saturation, Hue, and Lightness values)
Detail WGS data simulation
Zhian Kamvar's Ph. D. dissertation from Oregon State University
R package for clonal deconvolution
PhylogicNDT dockcer for clonal evolution analysis
Reopsitory with raw data and code to analyse the relationship between environmental conditions and clonality in Lepidium draba.
Minimal immune repertoire analysis pipeline using Change-O data to calculate clone diversity metrics (Shannon, Simpson) and visualize B-cell clonal distributions. Built in R.
Single-cell transcriptomic and B-lymphocyte repertoire analysis with R (Seurat)
This repository contains the code used for the project "Stochastic modeling of clonal memory effects on population growth of dividing and differentiating cells".
Genomic decomposition and reconstruction of non-tumor diploid subclones
R library for the analysis of partially clonal populations of polyploid individuals
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