electron-microscopy

Scientific analysis of nanoscale materials imaging data

Deep and Machine Learning for Microscopy

The software ReciPro makes various crystallographic calculations, visualizes a crystal structure, simulates diffraction patterns and TEM image, indexes diffraction spots, plots stereographic projection, and so on.

Read and write Neuroglancer datasets programmatically.

A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data

A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.

Collection of algorithms and routines for (ultrafast) electron diffraction and scattering

A curated list of awesome computational cryo-EM methods.

Open pixelated STEM framework

Axon/Myelin segmentation using Deep Learning

Scalable Optical Flow-based Image Montaging and Alignment

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)

Workflow for Simulation and Automatic Semantic Segmentation of Electron Microscopy Images

A curated list of awesome computational cryo-ET methods.

Python library for reading and writing scientific data format

Python program for automated electron diffraction data collection

Rethinking Decoder Design: Improving Biomarker Segmentation Using Depth-to-Space Restoration and Residual Linear Attention - Accepted in CVPR 2025

Experimental tech-demo for PhD thesis in Scientific Markdown; official:

ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.

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