experimental-evolution

seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies

A simple package for simulations of microbial growth experiments with realistic sources of error.

PUBLICATION: High-throughput analysis of adaptation using barcoded strains of Saccharomyces cerevisiae

Papaver experiment with drought and competition treatment (University of Frankfurt)

Code for "Genetic background and thermal regime influence adaptation to novel environment in the seed beetle" (JEB, 2024)

Drosophila larval hemocyte single cell RNA-seq analysis pipeline

Repo for: Chuong et al. (2024) DNA replication errors are a major source of adaptive gene amplification

Experimental evolution and pooled sequencing analysis of antifungal adaptation in S. cerevisiae