manuscript-code

Code and data for the paper “An analysis of the cloud environment over the Ross Sea and Ross Ice Shelf using CloudSat/CALIPSO satellites: The importance of Synoptic” by Jolly et al. (2018)

More detailed growth models using inference.

Code for the paper “Climate model code genealogy and its relation to climate feedbacks and sensitivity” by Kuma et al. (2023)

Dissecting systems serology with a tensor factorization

Study Fc antibody dynamics using a multivalent binding model

Code and data for the paper “Direct radiative effects of airborne microplastics” by Revell et al. (2021)

A binding-reaction model for the common gamma chain receptor cytokines.

This is to show oscillations in the number of cells in G1 and in G2 phase of cell cycle.

A Multivalent Binding Model for FcgRs

Code for the paper “Machine learning of cloud types in satellite observations and climate models” by Kuma et al. (2023)

The structure is the message: preserving experimental context through tensor decomposition

Trafficking model of FcRn to explain the effects of failed release at the cell surface.

Clusters phosphoproteomics data by sequence and abundance dynamics

一个出图+组图skill，附带一整套svg工具

R code for “Hierarchical Bayesian modeling of heterogeneous outcome variance in cluster randomized trials” by Guangyu Tong, Jiaqi Tong, Yi Jiang, Denise Esserman, Michael O. Harhay, and Joshua L. Warren. Clinical Trials (2024), 21(4):451–460.

R package for “Semiparametric Principal Stratification Analysis Beyond Monotonicity” by Jiaqi Tong, Brennan Kahan, Michael O. Harhay, and Fan Li. Statistica Sinica, in press.

A modeling perspective on cell selective ligands

Inferring antibody species from systems serology with a mechanistic binding model.

Reproducible analysis for between-visit cerebrovascular and cardiovascular responses during the cold pressor test