The codebase of the OpenMS project
pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.
Identify and quantify MHC eluted peptides from mass spectrometry raw data
A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
Proteomics label-free quantification (LFQ) analysis pipeline
SDRF official validator and converts SDRF to pipeline configuration files
Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
Python module for lipidomics LC MS/MS data analysis
🐍 Open-Source Software for the semi-automated analysis of glycopeptide mass spectrometry data
A cloud-based system to support proteomics laboratories in daily quality assessment using a user-friendly interface, easy setup, automated data processing and archiving, and unbiased instrument evaluation.
Select specified scans and precursors from a mzML file
Interactive proteoform-centric visualization for top-down proteomics — OpenMS GSoC 2026 prototype
A simple HTML interface for converting RAW format to MzML, MzXML, and MGF files.
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