tximport

Feature-rich Python implementation of the tximport package for gene count estimation.

Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.

Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2

Análise de RNA-seq - Abundância de Transcritos Utilizando kallisto, tximport e DESeq2

Análises de expressão diferencial de dados de sequenciamento de segunda geração (high-throughput sequencing reads, RNA-seq) realizadas utilizando as ferramentas kallisto.

docker file for genomic tools

RNA-seq workflow: gene-level exploratory analysis and differential expression.

Reproducible RNA-seq analysis (Salmon, tximport, DESeq2) — mouse dataset from Johns Hopkins Coursera course

Cross-platform C/C++ implementation of the tximport algorithm for gene-level quantification

Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.

Plug-and-play Nextflow workflow for paired-end bulk RNA-seq quantification with Salmon, tximport, FastQC, and MultiQC.