Issues

• extract all the reads from BAM files that contains a specific mutation

  walaj/VariantBam#27 · Filter by author lmanchon opened on Apr 21, 2026

• Downsampling ONT samples for CNV calling

  walaj/VariantBam#26 · Filter by author pablosoro opened on Mar 11, 2026

• removeElem error

  walaj/VariantBam#25 · Filter by author jsoghigian opened on Feb 19, 2025
  1

• variant hangs on Linux ARM64

  walaj/VariantBam#24 · Filter by author martin-g opened on Jun 27, 2024

• nbase filter

  walaj/VariantBam#23 · Filter by author zhoudreames opened on Oct 27, 2023
  2

• variant command overestimates max coverage with Nanopore reads

  walaj/VariantBam#22 · Filter by author pmaragno opened on May 15, 2023
  5

• Motif selection bam read error

  walaj/VariantBam#19 · Filter by author sammilee898 opened on Mar 31, 2020
  2

• Test runs - bams missing

  walaj/VariantBam#18 · Filter by author bknisbac opened on Nov 20, 2019

• Soft-clipping with linked-region filter

  walaj/VariantBam#17 · Filter by author daynefiler opened on May 10, 2019

• Options for parallelization/multi-core runs

  walaj/VariantBam#13 · Filter by author chapmanb opened on Aug 4, 2017
  10