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welch-lab

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  1. liger liger Public

    R package for integrating and analyzing multiple single-cell datasets

    R 435 81

  2. MultiVelo MultiVelo Public

    Multi-omic velocity inference

    Python 125 13

  3. PerturbNet PerturbNet Public

    PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

    Jupyter Notebook 69 16

  4. VeloVAE VeloVAE Public

    Deep Generative Modeling of RNA Velocity

    Jupyter Notebook 41 9

  5. cytosignal cytosignal Public

    R 37 1

  6. pyliger pyliger Public

    Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)

    Jupyter Notebook 31 10

Repositories

Showing 10 of 34 repositories
  • welch-lab.github.io Public Forked from vittala23/welchlab

    Welch Lab

    welch-lab/welch-lab.github.io's past year of commit activity
    HTML 2 1,354 0 1 Updated Oct 30, 2026
  • perturb-tags Public

    Code for reproducing Perturb-Tags analyses

    welch-lab/perturb-tags's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Oct 27, 2026
  • vista-fish Public
    welch-lab/vista-fish's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Oct 21, 2026
  • RcppPlanc Public
    welch-lab/RcppPlanc's past year of commit activity
    C++ 8 GPL-2.0 5 0 0 Updated Sep 17, 2026
  • libplanc Public Forked from ramkikannan/planc

    Distributed NMF/NTF Library

    welch-lab/libplanc's past year of commit activity
    C++ 3 22 1 0 Updated Sep 8, 2026
  • liger Public

    R package for integrating and analyzing multiple single-cell datasets

    welch-lab/liger's past year of commit activity
    R 435 GPL-3.0 81 38 (2 issues need help) 11 Updated Aug 18, 2026
  • cytosignal Public
    welch-lab/cytosignal's past year of commit activity
    R 37 1 8 0 Updated Jun 15, 2026
  • welch-lab/cytosignal-figure's past year of commit activity
    HTML 3 GPL-3.0 0 0 0 Updated Apr 22, 2026
  • MCST_Analysis_2026 Public

    Morphology Guided Spatial Transcriptomics (MCST) Analysis (Hypertrophic Chondrocytes in developing mouse femur)

    welch-lab/MCST_Analysis_2026's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 15, 2026
  • McCells Public
    welch-lab/McCells's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Feb 19, 2026

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