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Download assets from CompMetEng/toolbox-assets with fetchToolboxAsset - #5
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raven-data moved to CompMetEng/toolbox-assets, which holds the downloadable assets of RAVEN, raven-toolbox, GECKO and geckopy. fetchRavenDataAsset is renamed fetchToolboxAsset and downloads from the new repository; every caller and reference is updated. Original-commit: SysBioChalmers/RAVEN@f50baf2
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Function test results393 tests 354 ✅ 1m 29s ⏱️ Results for commit 286dd66. ♻️ This comment has been updated with latest results. |
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# Conflicts: # .github/scripts/assemble_offline_software.py # installation/fetchRavenDataAsset.m # src/installation/downloadRavenBinaries.m # src/installation/fetchRavenDataAsset.m # src/installation/fetchToolboxAsset.m # src/reconstruction/kegg/buildGlobalKEGGModel.m
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Copied from SysBioChalmers/RAVEN#764, opened by edkerk on 2026-10-15.
The downloadable assets (KEGG data, HMM libraries, the BLAST+, DIAMOND and HMMER binaries, WoLFPSORT) moved from
SysBioChalmers/raven-datatoCompMetEng/toolbox-assets. That repository now holds the assets of RAVEN, raven-toolbox, GECKO and geckopy. GitHub redirects the old URLs, so released versions keep working.fetchRavenDataAssetis renamedfetchToolboxAssetand downloads from the new repository; there is no wrapper under the old name.downloadRavenBinaries,buildGlobalKEGGModel,getKEGGModelForOrganism), the offline-bundle script, and the comments, messages and docs that named raven-data are updated.getPhylDist's help now says thatkeggPhylDist.matships with RAVEN and is derived from the KEGG taxonomy asset.Tested on MATLAB R2023a:
fetchToolboxAssetdownloadskegg118_taxonomy.gz, andtBinaries(BLAST+, DIAMOND, HMMER for linux-x86_64) passes against the new repository.#2 edits
checkRaven.m,.github/scripts/assemble_offline_software.pyand.github/workflows/tests.ymlas well; the overlap here is single lines that name raven-data.The same move in raven-toolbox: CompMetEng/raven-toolbox#172