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Release 13.0.1 - #681

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arrjon merged 97 commits into
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Oct 28, 2026
Merged

arrjon merged 97 commits into
mainfrom
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@arrjon

@arrjon arrjon commented Oct 26, 2026 •

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This release fixes some minor things in the tests related to petab and improves the documentation. The changes are minimal, just a bunch of commits left over from the last release. First #680 needs to be merged.

arrjon and others added 23 commits April 14, 2026 13:38
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
* multiprocessing callables are module-scope and pickle-friendly

* replace direct Process instantiation with get_mp_process utility
# Conflicts:
#	.github/workflows/ci.yml
* fix ruff
* Add better time tracking, #325, #667

* Add wall_time column to populations table
* Update particle weight normalization to global convention (breaking change for old databases) and fix minor bugs.

* migration for old databases
* FIX broken docstring

* CHG: Update PETab intersphinx inventory location

* Update external deendencies information
* Update docstring
@arrjon arrjon self-assigned this Oct 26, 2026
@arrjon
arrjon requested a review from kilianvolmer October 26, 2026 14:23
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codecov-commenter commented Oct 26, 2026 •

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⚠️ Please install the 'codecov app svg image' to ensure uploads and comments are reliably processed by Codecov.

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 79.50%. Comparing base (914ce7c) to head (3a51bd9).
❗ Your organization needs to install the Codecov GitHub app to enable full functionality.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #681      +/-   ##
==========================================
- Coverage   79.51%   79.50%   -0.02%     
==========================================
  Files         142      142              
  Lines        8415     8415              
  Branches     1122     1122              
==========================================
- Hits         6691     6690       -1     
  Misses       1356     1356              
- Partials      368      369       +1     
Flag Coverage Δ
base 59.40% <100.00%> (-0.02%) ⬇️
external-R 36.88% <100.00%> (-0.03%) ⬇️
external-other-simulators 31.50% <100.00%> (ø)
migrate 27.10% <100.00%> (ø)
petab 35.57% <100.00%> (ø)
visualization 52.71% <100.00%> (-0.15%) ⬇️

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@arrjon

arrjon commented Oct 27, 2026

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The PR is ready to be merged.

@arrjon
arrjon merged commit 973c1a9 into main Oct 28, 2026
74 of 77 checks passed
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4 participants