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Merged
VatsalSy merged 1 commit into from
Oct 1, 2026
Merged

Restore dense scholarly GitHub org profile source template #119

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4 changes: 4 additions & 0 deletions README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -744,6 +744,10 @@ The `scripts/` directory contains various utility scripts for development, testi
- **`sync_org_profile_publications.py`** - Org profile sync
- Pulls the publications block from `_research/index.md` into the
GitHub org profile README (kept in `_org_profile/`)
- `_org_profile/README.md` is the source of truth for the public
org profile and must stay dense scholarly (no badge/widget
walls); the sync workflow copies that file wholesale to
`comphy-lab/.github/profile/README.md`
- Run periodically; not part of the regular build

### Test Scripts
Expand Down
267 changes: 25 additions & 242 deletions _org_profile/README.md
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@@ -1,153 +1,34 @@
<div align="center">

# Computational Multiphase Physics (CoMPhy) Lab

### 🌊 Exploring Non-Newtonian Free-Surface Flows & Soft Matter Singularities 🌊
**Department of Physics · Durham University · United Kingdom**

[![Website](https://img.shields.io/badge/Website-comphy--lab.org-blue?style=for-the-badge&logo=google-chrome)](https://comphy-lab.org)
[![Email](https://img.shields.io/badge/Email-vatsalsy%40comphy--lab.org-red?style=for-the-badge&logo=gmail)](mailto:vatsalsy@comphy-lab.org)
[![GitHub](https://img.shields.io/badge/GitHub-%40comphy--lab-black?style=for-the-badge&logo=github)](https://github.com/comphy-lab)
[![YouTube](https://img.shields.io/badge/YouTube-%40CoMPhyLab-red?style=for-the-badge&logo=youtube)](https://www.youtube.com/@CoMPhyLab)
[![X](https://img.shields.io/badge/X-%40VatsalSanjay-black?style=for-the-badge&logo=x)](https://twitter.com/VatsalSanjay)
[![Bluesky](https://img.shields.io/badge/Bluesky-comphy--lab.org-00A8E8?style=for-the-badge&logo=bluesky)](https://bsky.app/profile/comphy-lab.org)
We study non-Newtonian free-surface flows and soft-matter singularities. The group sits at the intersection of applied mathematics, fluid mechanics, and direct numerical simulation, and develops open-source codes and theory for soft-matter phenomena across length and time scales.

[![Location](https://img.shields.io/badge/📍_Durham_University-UK-purple?style=flat-square)](https://www.durham.ac.uk/departments/academic/physics/)
[![Department](https://img.shields.io/badge/Department-Physics-orange?style=flat-square)](https://www.durham.ac.uk/staff/vatsal-sanjay/)
[![Repositories](https://img.shields.io/badge/Public_Repos-69-green?style=flat-square)](https://github.com/orgs/comphy-lab/repositories)
[![Profile Views](https://komarev.com/ghpvc/?username=comphy-lab&label=Profile%20views&color=orange&style=flat-square)](https://github.com/comphy-lab)
[Website](https://comphy-lab.org) · [People](https://comphy-lab.org/team) · [Research](https://comphy-lab.org/research) · [Opportunities](https://comphy-lab.org/join) · [Email](mailto:vatsal.sanjay@comphy-lab.org) · [YouTube](https://www.youtube.com/@CoMPhyLab) · [Bluesky](https://bsky.app/profile/comphy-lab.org) · [X](https://twitter.com/VatsalSanjay)

</div>
## Research themes

---
- **Drop impact and forces** — inertia, viscosity, wettability, and rheology in impact, rebound, and soft-sphere analogues
- **Bubbles and singularities** — capillary-wave focusing, Worthington jets, and pinch-off in Newtonian and complex fluids
- **Sheets and films** — hole nucleation, Taylor–Culick retraction, and film rupture
- **Open-source DNS** — Basilisk C extensions for viscoelastic, viscoplastic, and elastoviscoplastic multiphase flow

## 🔬 About CoMPhy Lab
Current interests include mycofluidic transport, non-Newtonian effects on hydrodynamic singularities, and respiratory-droplet formation driven by viscoelastic mucus rheology.

<div align="center">

We are a computational physics research group based at the **Department of Physics** at **Durham University**. Our research focuses on understanding complex fluid dynamics phenomena through advanced computational methods.
## Featured repositories

</div>
| Repository | Focus |
| --- | --- |
| [MultiRheoFlow](https://github.com/comphy-lab/MultiRheoFlow) | Multiphase flows with complex rheology on Basilisk C |
| [Viscoelastic3D](https://github.com/comphy-lab/Viscoelastic3D) | Three-dimensional viscoelastic solver extension |
| [Viscoelastic Worthington jets](https://github.com/comphy-lab/Viscoelastic-Worthington-jets-and-droplets-produced-by-bursting-bubbles) | Jets and droplets from bursting viscoelastic bubbles |
| [JumpingBubbles](https://github.com/comphy-lab/JumpingBubbles) | Coalescence-induced bubble jumping |
| [basilisk-C](https://github.com/comphy-lab/basilisk-C) | Lab-maintained Basilisk C install and version pin |
| [Basilisk-101](https://github.com/comphy-lab/Basilisk-101) | Onboarding notebooks for Basilisk CFD |

### 🎯 Research Focus
[All public repositories →](https://github.com/orgs/comphy-lab/repositories)

<div align="center">

![Multiphase Flows](https://img.shields.io/badge/Multiphase_Flows-🌊-blue?style=for-the-badge)
![Non-Newtonian Fluids](https://img.shields.io/badge/Non--Newtonian_Fluids-🧪-green?style=for-the-badge)
![Soft Matter](https://img.shields.io/badge/Soft_Matter-🔬-purple?style=for-the-badge)
![Singularities](https://img.shields.io/badge/Singularities-⚡-orange?style=for-the-badge)
![Free Surface Flows](https://img.shields.io/badge/Free_Surface_Flows-💧-cyan?style=for-the-badge)
![Computational Physics](https://img.shields.io/badge/Computational_Physics-💻-red?style=for-the-badge)

</div>

---

## 🛠️ Technical Expertise

### Languages & Tools

<div align="center">

![C](https://img.shields.io/badge/C-00599C?style=for-the-badge&logo=c&logoColor=white)
![C++](https://img.shields.io/badge/C++-00599C?style=for-the-badge&logo=c%2B%2B&logoColor=white)
![Python](https://img.shields.io/badge/Python-3776AB?style=for-the-badge&logo=python&logoColor=white)
![Fortran](https://img.shields.io/badge/Fortran-734F96?style=for-the-badge&logo=fortran&logoColor=white)
![MATLAB](https://img.shields.io/badge/MATLAB-0076A8?style=for-the-badge&logo=mathworks&logoColor=white)
![Julia](https://img.shields.io/badge/Julia-9558B2?style=for-the-badge&logo=julia&logoColor=white)

</div>

### Computational Frameworks

<div align="center">

![Basilisk](https://img.shields.io/badge/Basilisk_C-🌊-blue?style=for-the-badge)
![OpenFOAM](https://img.shields.io/badge/OpenFOAM-🔥-red?style=for-the-badge)
![LAMMPS](https://img.shields.io/badge/LAMMPS-⚛️-green?style=for-the-badge)
![Gerris](https://img.shields.io/badge/Gerris-💧-cyan?style=for-the-badge)
![HPC](https://img.shields.io/badge/HPC-🖥️-purple?style=for-the-badge)
![OpenMPI](https://img.shields.io/badge/MPI-🔄-orange?style=for-the-badge)

</div>

---

## 📊 Lab Activity & Metrics

### 🔄 Development Workflow

<div align="center">
<a href="https://next.ossinsight.io/widgets/official/compose-org-overview-stats?activity=pull-requests&owner_id=114741869&period=past_12_months" target="_blank">
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<source media="(prefers-color-scheme: dark)" srcset="https://next.ossinsight.io/widgets/official/compose-org-overview-stats/thumbnail.png?activity=pull-requests&owner_id=114741869&period=past_12_months&image_size=2x2&color_scheme=dark" width="32%" height="auto">
<img alt="Pull Requests Overview" src="https://next.ossinsight.io/widgets/official/compose-org-overview-stats/thumbnail.png?activity=pull-requests&owner_id=114741869&period=past_12_months&image_size=2x2&color_scheme=light" width="32%" height="auto">
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<a href="https://next.ossinsight.io/widgets/official/compose-org-overview-stats?activity=issues&owner_id=114741869&period=past_12_months" target="_blank">
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<source media="(prefers-color-scheme: dark)" srcset="https://next.ossinsight.io/widgets/official/compose-org-overview-stats/thumbnail.png?activity=issues&owner_id=114741869&period=past_12_months&image_size=2x2&color_scheme=dark" width="32%" height="auto">
<img alt="Issues Overview" src="https://next.ossinsight.io/widgets/official/compose-org-overview-stats/thumbnail.png?activity=issues&owner_id=114741869&period=past_12_months&image_size=2x2&color_scheme=light" width="32%" height="auto">
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<a href="https://next.ossinsight.io/widgets/official/compose-org-overview-stats?activity=commits&owner_id=114741869&period=past_12_months" target="_blank">
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<source media="(prefers-color-scheme: dark)" srcset="https://next.ossinsight.io/widgets/official/compose-org-overview-stats/thumbnail.png?activity=commits&owner_id=114741869&period=past_12_months&image_size=2x2&color_scheme=dark" width="32%" height="auto">
<img alt="Commits Overview" src="https://next.ossinsight.io/widgets/official/compose-org-overview-stats/thumbnail.png?activity=commits&owner_id=114741869&period=past_12_months&image_size=2x2&color_scheme=light" width="32%" height="auto">
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</a>
</div>

### 📈 Contribution Trends

<div align="center">
<a href="https://next.ossinsight.io/widgets/official/compose-org-activity-growth-total?activity=commits&owner_id=114741869&period=past_12_months" target="_blank">
<picture>
<source media="(prefers-color-scheme: dark)" srcset="https://next.ossinsight.io/widgets/official/compose-org-activity-growth-total/thumbnail.png?activity=commits&owner_id=114741869&period=past_12_months&image_size=4x7&color_scheme=dark" width="75%" height="auto">
<img alt="Commits Trends" src="https://next.ossinsight.io/widgets/official/compose-org-activity-growth-total/thumbnail.png?activity=commits&owner_id=114741869&period=past_12_months&image_size=4x7&color_scheme=light" width="75%" height="auto">
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</a>
</div>

### 🎯 Productivity Metrics

<div align="center">
<a href="https://next.ossinsight.io/widgets/official/compose-org-productivity-ratio?activity=pull-requests%2Fmerged&owner_id=114741869&period=past_12_months" target="_blank">
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<source media="(prefers-color-scheme: dark)" srcset="https://next.ossinsight.io/widgets/official/compose-org-productivity-ratio/thumbnail.png?activity=pull-requests%2Fmerged&owner_id=114741869&period=past_12_months&image_size=3x3&color_scheme=dark" width="32%" height="auto">
<img alt="PR Merge Rate" src="https://next.ossinsight.io/widgets/official/compose-org-productivity-ratio/thumbnail.png?activity=pull-requests%2Fmerged&owner_id=114741869&period=past_12_months&image_size=3x3&color_scheme=light" width="32%" height="auto">
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<a href="https://next.ossinsight.io/widgets/official/compose-org-productivity-ratio?activity=issues%2Fclosed&owner_id=114741869&period=past_12_months" target="_blank">
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<source media="(prefers-color-scheme: dark)" srcset="https://next.ossinsight.io/widgets/official/compose-org-productivity-ratio/thumbnail.png?activity=issues%2Fclosed&owner_id=114741869&period=past_12_months&image_size=3x3&color_scheme=dark" width="32%" height="auto">
<img alt="Issue Resolution Rate" src="https://next.ossinsight.io/widgets/official/compose-org-productivity-ratio/thumbnail.png?activity=issues%2Fclosed&owner_id=114741869&period=past_12_months&image_size=3x3&color_scheme=light" width="32%" height="auto">
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<a href="https://next.ossinsight.io/widgets/official/compose-org-productivity-ratio?activity=reviews%2Freviewed&owner_id=114741869&period=past_12_months" target="_blank">
<picture>
<source media="(prefers-color-scheme: dark)" srcset="https://next.ossinsight.io/widgets/official/compose-org-productivity-ratio/thumbnail.png?activity=reviews%2Freviewed&owner_id=114741869&period=past_12_months&image_size=3x3&color_scheme=dark" width="32%" height="auto">
<img alt="Review Rate" src="https://next.ossinsight.io/widgets/official/compose-org-productivity-ratio/thumbnail.png?activity=reviews%2Freviewed&owner_id=114741869&period=past_12_months&image_size=3x3&color_scheme=light" width="32%" height="auto">
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</a>
</div>

---

## 🚀 Featured Projects

<div align="center">

| Project | Description | Technologies | Status |
| --- | --- | --- | --- |
| 🌊 [**Bubble Dynamics**](https://github.com/comphy-lab) | Worthington jet formation from bursting bubbles | Basilisk C, MPI | ![Active](https://img.shields.io/badge/Active-green?style=flat-square) |
| 💧 [**Droplet Physics**](https://github.com/comphy-lab) | Non-Newtonian droplet impact phenomena | OpenFOAM, Python | ![Active](https://img.shields.io/badge/Active-green?style=flat-square) |
| 🔄 [**Viscoelastic Flows**](https://github.com/comphy-lab) | Complex fluid behavior in confined geometries | Basilisk C, Julia | ![Development](https://img.shields.io/badge/Development-yellow?style=flat-square) |
| ⚡ [**Singularity Formation**](https://github.com/comphy-lab) | Soft matter singularities and breakup | C++, MATLAB | ![Research](https://img.shields.io/badge/Research-blue?style=flat-square) |

</div>

### 📚 Recent Publications
## Recent publications

<!-- RECENT_PUBLICATIONS_START -->
1. Verschuur, C. I., Oratis, A. T., Sanjay, V., & Snoeijer, J. H. How elasticity affects bubble pinch-off. Phys. Rev. Fluids (2026).
Expand All @@ -157,108 +38,10 @@ We are a computational physics research group based at the **Department of Physi
[View all publications →](https://comphy-lab.org/research)
<!-- RECENT_PUBLICATIONS_END -->

---

## 👥 Community & Collaboration

### 🤝 Active Contributors

<div align="center">
<a href="https://next.ossinsight.io/widgets/official/compose-org-active-contributors?activity=active&owner_id=114741869&period=past_12_months" target="_blank">
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<source media="(prefers-color-scheme: dark)" srcset="https://next.ossinsight.io/widgets/official/compose-org-active-contributors/thumbnail.png?activity=active&owner_id=114741869&period=past_12_months&image_size=3x4&color_scheme=dark" width="45%" height="auto">
<img alt="Active Contributors" src="https://next.ossinsight.io/widgets/official/compose-org-active-contributors/thumbnail.png?activity=active&owner_id=114741869&period=past_12_months&image_size=3x4&color_scheme=light" width="45%" height="auto">
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</a>
<a href="https://next.ossinsight.io/widgets/official/analyze-org-activity-action-top-repos?activity=issues%2Fissue-comments&owner_id=114741869&period=past_12_months" target="_blank">
<picture>
<source media="(prefers-color-scheme: dark)" srcset="https://next.ossinsight.io/widgets/official/analyze-org-activity-action-top-repos/thumbnail.png?activity=issues%2Fissue-comments&owner_id=114741869&period=past_12_months&image_size=3x6&color_scheme=dark" width="45%" height="auto">
<img alt="Active Discussions" src="https://next.ossinsight.io/widgets/official/analyze-org-activity-action-top-repos/thumbnail.png?activity=issues%2Fissue-comments&owner_id=114741869&period=past_12_months&image_size=3x6&color_scheme=light" width="45%" height="auto">
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</a>
</div>

### ⏰ Contribution Patterns

<div align="center">
<a href="https://next.ossinsight.io/widgets/official/analyze-org-commits-time-distribution?zone=0&owner_id=114741869&period=past_12_months" target="_blank">
<picture>
<source media="(prefers-color-scheme: dark)" srcset="https://next.ossinsight.io/widgets/official/analyze-org-commits-time-distribution/thumbnail.png?zone=0&owner_id=114741869&period=past_12_months&image_size=4x5&color_scheme=dark" width="75%" height="auto">
<img alt="Contribution Time Distribution" src="https://next.ossinsight.io/widgets/official/analyze-org-commits-time-distribution/thumbnail.png?zone=0&owner_id=114741869&period=past_12_months&image_size=4x5&color_scheme=light" width="75%" height="auto">
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</a>
</div>

---

## 📰 Recent Activity

<div align="center">
<a href="https://next.ossinsight.io/widgets/official/compose-recent-active-contributors?owner_id=114741869&limit=10" target="_blank">
<picture>
<source media="(prefers-color-scheme: dark)" srcset="https://next.ossinsight.io/widgets/official/compose-recent-active-contributors/thumbnail.png?owner_id=114741869&limit=10&image_size=4x6&color_scheme=dark" width="80%" height="auto">
<img alt="Recent Active Contributors" src="https://next.ossinsight.io/widgets/official/compose-recent-active-contributors/thumbnail.png?owner_id=114741869&limit=10&image_size=4x6&color_scheme=light" width="80%" height="auto">
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</a>
</div>

---

## 🌟 Get Involved

### 🔬 **Open Science Commitment**

We believe in open and reproducible science. All our computational tools and datasets are openly available to the research community.

### 💡 **Collaboration Opportunities**

- 🎓 **PhD/Postdoc Positions**: Check our [opportunities page](https://comphy-lab.org/opportunities)
- 🤝 **Research Collaborations**: Contact us for potential collaborations
- 💻 **Code Contributions**: See our repositories and contribution guidelines
- 📚 **Use Our Tools**: All our software is open-source and documented

### 📬 **Contact Us**

[![Email](https://img.shields.io/badge/Email-vatsalsy%40comphy--lab.org-red?style=for-the-badge&logo=gmail)](mailto:vatsalsy@comphy-lab.org)
[![Website](https://img.shields.io/badge/Visit_Our_Website-blue?style=for-the-badge&logo=google-chrome)](https://comphy-lab.org)
[![GitHub Discussions](https://img.shields.io/badge/GitHub_Discussions-black?style=for-the-badge&logo=github)](https://github.com/orgs/comphy-lab/discussions)

</div>

---

<div align="center">

### 🏆 Lab Statistics

![GitHub Org's stars](https://img.shields.io/github/stars/comphy-lab?style=social)
![GitHub followers](https://img.shields.io/github/followers/comphy-lab?style=social)

<details>
<summary>📊 Detailed GitHub Stats</summary>
<br>

<div align="center">
<a href="https://next.ossinsight.io/widgets/official/compose-org-stats-languages?owner_id=114741869" target="_blank">
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<source media="(prefers-color-scheme: dark)" srcset="https://next.ossinsight.io/widgets/official/compose-org-stats-languages/thumbnail.png?owner_id=114741869&image_size=4x5&color_scheme=dark" width="48%" height="auto">
<img alt="Language Distribution" src="https://next.ossinsight.io/widgets/official/compose-org-stats-languages/thumbnail.png?owner_id=114741869&image_size=4x5&color_scheme=light" width="48%" height="auto">
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<a href="https://next.ossinsight.io/widgets/official/compose-last-28-days-activities?owner_id=114741869&activity=pull-requests" target="_blank">
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<source media="(prefers-color-scheme: dark)" srcset="https://next.ossinsight.io/widgets/official/compose-last-28-days-activities/thumbnail.png?owner_id=114741869&activity=pull-requests&image_size=4x5&color_scheme=dark" width="48%" height="auto">
<img alt="Recent Activity" src="https://next.ossinsight.io/widgets/official/compose-last-28-days-activities/thumbnail.png?owner_id=114741869&activity=pull-requests&image_size=4x5&color_scheme=light" width="48%" height="auto">
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</details>

---
## Join and contact

<p align="center">
<i>Advancing computational physics one simulation at a time 🚀</i>
</p>
Open science is the default: simulation codes and analysis for papers live in public repositories under this organization.

</div>
- Positions and projects: [comphy-lab.org/join](https://comphy-lab.org/join)
- PI: [Vatsal Sanjay](https://www.durham.ac.uk/staff/vatsal-sanjay/) · [vatsal.sanjay@comphy-lab.org](mailto:vatsal.sanjay@comphy-lab.org)
- Discussions: [github.com/orgs/comphy-lab/discussions](https://github.com/orgs/comphy-lab/discussions)
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