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Provide the generated markdown to the user dynamically (being sent to a given file location set within app locally, or in-browser pane alongside the Docs editor)
Don't think Docs is parsed cleanly enough at present
Need to solve the scaling problem of document parsing
Unsustainable scaling of processing time with document length, lags something awful
perhaps some sort of awareness of prior progress through document would be appropriate. A miniature version control, with server-captured session variables defining which lines were last edited perhaps...?
Misc:
Zapier could play a role in wiring these together: see S3/Drive zaps
Weavr is along the right lines, except for LaTeX, and closed source, and pretty sure it doesn't parse the text (so might just auto-convert to plaintext, which is cheating)