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Install rapids-singlecell from its CUDA 12 wheels #25

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Merged
Marius1311 merged 1 commit into from
Oct 19, 2026
Merged

Install rapids-singlecell from its CUDA 12 wheels #25

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7 changes: 4 additions & 3 deletions {{cookiecutter.project_name}}/pixi.toml
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Expand Up @@ -73,9 +73,10 @@ celltypist = ">=1.7.1, <2"
extra-index-urls = ["https://pypi.nvidia.com"]

[feature.gpu.target.linux-64.pypi-dependencies]
# `rapids-cu12` extra pulls cuml/cupy/cudf from pypi.nvidia.com; without it
# rapids-singlecell installs without the GPU libs and silently runs on CPU.
rapids-singlecell = { version = ">=0.15, <0.16", extras = ["rapids-cu12"] }
# The `-cu12` package ships the wheels; `rapids-singlecell` itself is an sdist whose build needs nvcc.
# `rapids` extra pulls cuml/cupy/cudf from pypi.nvidia.com; without it rapids-singlecell
# installs without the GPU libs and silently runs on CPU.
rapids-singlecell-cu12 = { version = ">=0.15, <0.16", extras = ["rapids"] }
jax = { version = "<0.9.0", extras = ["cuda12"] }

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